Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1490 ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGCATGGCACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTGAACTATCTAAGGCCTAACATTAAGCACGGGGAATTCTCCGATGAGGAAGACAGAATCATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAACTTAAGAGGAAACTCATGGGGTTGCTTCCTTCATCTCATCAAAGAATAGCACCCTATCAACAATTCTCCTCTCAAAACCCTTCATCATTTCCTTCTCACTCATCGCTATCCTCTTCACAATATAGGGACTACTACTACAACTCCTCTCATCATTATTACATCCCAGCACCAACCTCATCTTTCACATGCCTTGAACCAATTTCTGCTCCTTCAAGTAATTACACAAACACAACAACAACCTCCAACTCTCTCTCTTTTTACCAACACCAAGAGCCCTTGGTCAGTGTTAGTCCCAGGCAGTATTACCCCATCACAGACAGTTCCATGCTTGTGTTTGGTAGTGAAACAAGTTGCAGCTCCTCTGATGGAAGCTGCAGTCAGGTTAGCCTTGGCAGAGAGATCAAACAAGAAGACATGGGGTTTCAGAATTTCATGTTTGGAGATCATCAGAACATGAACAAATTCATGAACATTAATCATGATGGAGGTGAAGAATATGTGAACCAATGGACACAGAGGCCAAACGGGTACATTTTTCAGACTCAACAAACAGCATTGGATTATGATCTTGAGGTCATTAAGAACCTAATTTGTAGCAACAGCAGTAGTAATAGTAATAATGGGTACTTGAGTGTTGATGAAAACAAGACGGAGGAGAAGGGTGTGTACTACAACTACTGCAACTGA 1023 0.4233 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPSSHQRIAPYQQFSSQNPSSFPSHSSLSSSQYRDYYYNSSHHYYIPAPTSSFTCLEPISAPSSNYTNTTTTSNSLSFYQHQEPLVSVSPRQYYPITDSSMLVFGSETSCSSSDGSCSQVSLGREIKQEDMGFQNFMFGDHQNMNKFMNINHDGGEEYVNQWTQRPNGYIFQTQQTALDYDLEVIKNLICSNSSSNSNNGYLSVDENKTEEKGVYYNYCN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1490 340 Gene3D - 69 139 - -
Gso12g1490 340 PANTHER TRANSCRIPTION FACTOR RAX3 1 318 - -
Gso12g1490 340 SMART sant 13 64 IPR001005 -
Gso12g1490 340 SMART sant 67 115 IPR001005 -
Gso12g1490 340 CDD SANT 16 62 IPR001005 -
Gso12g1490 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso12g1490 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso12g1490 340 Gene3D - 7 68 - -
Gso12g1490 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso12g1490 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso12g1490 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso12g1490 340 CDD SANT 70 113 IPR001005 -
Gso12g1490 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso12g1490 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso12g1490 340 PANTHER OS09G0431300 PROTEIN 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1490 Gso-Chr12 38121263 38123326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1490 1 119 MYB Transcription Factor Family AT5G57620 89.916 1.41e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g1490 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1490 K09422 - gmx:100796382 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1490 12 38121263 38123326 Gso11g3353 11 49332378 49334266 GST
Gso12g1490 12 38121263 38123326 Gso12g0650 12 6258596 6260871 PCT
Gso12g1490 12 38121263 38123326 Gso11g1468 11 17052869 17054825 PCT
Gso12g0650 12 6258596 6260871 Gso12g1490 12 38121263 38123326 PCT
Gso11g1468 11 17052869 17054825 Gso12g1490 12 38121263 38123326 PCT