Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1488 ATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCGCAGAAGAAGGCGGCGGCAGCGGCCAAGAGAGGAGGCAAAGCAGCAGCTGCTTCGTCGAAAACGACGTCGTCGGAGAAGGCCGCCGACAAGCTTGCCAACGGAATTGGGGAAATTCAGATATCCGATCGAACCTGCACCGGTGTCCTCTGCTCGCATCCTCTTTCCAGGGATATTAGGATAGAATCTCTGTCAGTTACTTTTCATGGACATGATTTGATAGTTGATTCCGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGGAAGTCTACCCTGCTTACGGCTATAGGTTGTCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCGCAGGATGATGGGGGTGGGGAAGCTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACACGCGATTTCTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATCCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTCGAAGAGAATCTGAAGAAGTTTGAACGTATTCTGGTTGTGGTTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAACTCTTCACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCGATGAAGGAATACATTGCCCGATTTGGTCATGGATCAGCAAAACTAGCCCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTGCAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACTCCTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGGATTGCACAATTTCACCAGCACTTGGCTGAGAAGCTAGACTTGGAAATGTCTGCCCTCCAGTATATGATAAAAGAATACCCTGGAAACGAGGAGGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTGTCTGGCAAAGCGCAGGTCATGCCTATGAAGAATTTATCCGATGGGCAGAGGAGCCGTGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACCTGCTACTTTTGGATGAGCCAACGAACCATTTGGATATAGAAACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTTGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA 1788 0.4625 MVSDASKKKAAQKKAAAAAKRGGKAAAASSKTTSSEKAADKLANGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAEALAAQDDGGGEALERIYERLEAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVVSHSQDFLNGVCTNIIHMQNKKLKLFTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLEPLDGMVRRHNHLRIAQFHQHLAEKLDLEMSALQYMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1488 595 PANTHER - 1 595 - -
Gso12g1488 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 313 IPR027417 -
Gso12g1488 595 MobiDBLite consensus disorder prediction 1 37 - -
Gso12g1488 595 CDD ABCF_EF-3 380 571 - -
Gso12g1488 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Gso12g1488 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Gso12g1488 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 574 IPR027417 -
Gso12g1488 595 SMART AAA_5 93 295 IPR003593 -
Gso12g1488 595 SMART AAA_5 405 593 IPR003593 -
Gso12g1488 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Gso12g1488 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Gso12g1488 595 Pfam ABC transporter 280 356 IPR032781 -
Gso12g1488 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Gso12g1488 595 Gene3D - 69 333 IPR027417 -
Gso12g1488 595 CDD ABCF_EF-3 69 286 - -
Gso12g1488 595 Gene3D - 355 593 IPR027417 -
Gso12g1488 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1488 Gso-Chr12 38055313 38059237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1488 200 267 Calmodulin-binding Proteins AT2G36910 41.429 1.20e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1488 K06185 - gmx:100785099 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1488 12 38055313 38059237 Gso11g3355 11 49375643 49379877 GST
Gso12g1488 12 38055313 38059237 Gso12g0647 12 6209089 6213779 PCT
Gso12g1488 12 38055313 38059237 Gso11g1473 11 17106930 17110618 PCT
Gso12g0647 12 6209089 6213779 Gso12g1488 12 38055313 38059237 PCT
Gso11g1473 11 17106930 17110618 Gso12g1488 12 38055313 38059237 PCT