Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1479 ATGAGCAATTTAAGGCCTGAATCTCATGTAGCACAGCAAATTCGGCGTGAAAAATTGCGAATCCAGAACAGTTCTCAGCCTTCACACGAATTCCCTAACAATCTTGAACAGTTATCTTTACACCCGGCGGGGGGGTTTAATAACTTGGACCTTCTTCAAGTTAGGAGTGTTAGAAATGCTAACATCCTTGATGGGCTAGCTGTTTATTCATCAGAAATGCCAAACTTTTCTACCTCTTCGTCGAATCCTAATTTGTCTGATGCAAGGAACGCGTTGGAGTATCACCAAGAACAAGGTGCAGCAGCTGAACCGAGTAATAGGCTGATGATGAATCAATATGGTTCATTTCCCCATTCCATGTCTGCAATTCATTCTTCCCATAAAGAACACTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTGCCCCCCATCAGGGGTCTGATTGGTTTGTGAATTATGCAAGCAATGCCAATTCTTTTTTGTCTGCTGACCTCAACAACAACGTGTCTGCTTACAACGAACTTATGGATGTACACTGTAGCAATGCATCTGGTGAAATCAGTGGTAGAGAAATTCAGAAGCAATTAGGTGTACTGCATAATAATCCTCCTCCTTCTCCGCTTTATCAGAATGCTTTGCAAGATATTGTGAAGTCTGCTTCTTTCAGTTCTCACACTAGGCAAGACATGTCTTCACTGATGCAACAAAATGACCACAGTATTTGGGTGGGGAATGCTGGTGAAGCTGAGCCTCAACAACCAAGTTATGAAAACCAGCCAAATCAGTTGCATTTTGGGTGGACAAATCGAACAATTGCTAATACCCTGAGTGATTCAACTCCTCAGAGCTTATCCTTGTCACTTTCATCAAATGCACAACCCAAACCTTCTGTTTCTCACCTTGAACAAGGGTCTGCATCAGATGATCCTCAATGTTTGACGAATATGAAATCTATTGTAAAACCATCTATTGTTTCTAGAGATATTGGGAAATCAGTTCAAGAAACGGTGGGAATGCCTTCAAAGAGTACTATTACTTATCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATCCTTAAGAGTTCAAGGTTCTTAAAGTCTGCCCAACAATTGTTAGATGAAATTTGCTGTCTATCTGGTGCAAAATTTGCGAAATCATATGATGTTTCCAAGAGGGTTTCTCCAGAAGTTAGTGCCTCTACTTCTGCTGATACTGTTACTGGGGTTGCTGCAAAAGGTAGTAACTCAGGTTCTTCATCATCTATTTTGTATAGTGTTTCAAAGGAAAATAGGGCTGATCCAGGAGTTAGAAGTAGCTTTGGTCTTTCCTCGAGGCCAGATTATCAACATAAGAAAGCAAAGCTACTGTACATGCAAGAGGAGGTTACCCGGCAGTGCAAACAGTACCATCTACAAATGCAAATGGTTGTTTCATCGTTCGAGTCAGTGGCGGGTCTTGGTTCTGCTACTCCTTACATCCCCATGGCTCTCAAATCAGTATCAAAACACTTCAGGTGCTTTAAAAATTCTATCTCAGAACAGCTCAAGCTTATAAGTGAGGCCTTGGGAGAGGATTTGTCCAAACCCTCCAACACCAGTACTTGTAGTAATAAAGCTGACACTACTACTACTAAGGCAAGGATAAGATGCAGCATCGACCAAAGCTTTCTGAAGAACAAATCTGTAAAGGGTACCACGGAACTTCTTGAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTAGTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACACGCTTGAAACAAAAGCAACAAGCTCCAAGGGCAATTGTGGTAAAAACGAGGGAACTTCTTCTGGCACTGAAGGTGATACCAGCCACCCTAGAGCTTTGAGCAATATTGGTATGAATTCAATACCTGAAAACCAATTTCAGGGTATGGATATGGGATCATCCATTATTGCTGCAAATGCTGAGGAAAGTGGGTTAAATTCAGAACAATGGAGTCAAGAGAAGAGGTCTAAGTTGGAATGCCAAATGACTACTTCAAACATGGATGGAACACTGATGGGTTTTGTGCCATACCGACGCGGCGGTGGCATAGAGGTTGGTGGGCTAGGGTCTGTGTCACTAACATTGGGTCTTAGGCATGGTGTTGAAGGTGTACAGCACCAACAACAATTGCAAGAGGAGCAACTTAGACATCACCTTGGAGGGCACATGATCCATGACTTTGTGGGCTGA 2385 0.4302 MSNLRPESHVAQQIRREKLRIQNSSQPSHEFPNNLEQLSLHPAGGFNNLDLLQVRSVRNANILDGLAVYSSEMPNFSTSSSNPNLSDARNALEYHQEQGAAAEPSNRLMMNQYGSFPHSMSAIHSSHKEHCELRNLGNWRNSAPHQGSDWFVNYASNANSFLSADLNNNVSAYNELMDVHCSNASGEISGREIQKQLGVLHNNPPPSPLYQNALQDIVKSASFSSHTRQDMSSLMQQNDHSIWVGNAGEAEPQQPSYENQPNQLHFGWTNRTIANTLSDSTPQSLSLSLSSNAQPKPSVSHLEQGSASDDPQCLTNMKSIVKPSIVSRDIGKSVQETVGMPSKSTITYRSVGPLGPFTGYATILKSSRFLKSAQQLLDEICCLSGAKFAKSYDVSKRVSPEVSASTSADTVTGVAAKGSNSGSSSSILYSVSKENRADPGVRSSFGLSSRPDYQHKKAKLLYMQEEVTRQCKQYHLQMQMVVSSFESVAGLGSATPYIPMALKSVSKHFRCFKNSISEQLKLISEALGEDLSKPSNTSTCSNKADTTTTKARIRCSIDQSFLKNKSVKGTTELLEQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHTLETKATSSKGNCGKNEGTSSGTEGDTSHPRALSNIGMNSIPENQFQGMDMGSSIIAANAEESGLNSEQWSQEKRSKLECQMTTSNMDGTLMGFVPYRRGGGIEVGGLGSVSLTLGLRHGVEGVQHQQQLQEEQLRHHLGGHMIHDFVG* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1479 794 ProSiteProfiles 'Homeobox' domain profile. 576 639 IPR001356 GO:0003677
Gso12g1479 794 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 30 766 - -
Gso12g1479 794 Pfam Homeobox KN domain 596 635 IPR008422 GO:0003677|GO:0006355
Gso12g1479 794 MobiDBLite consensus disorder prediction 650 679 - -
Gso12g1479 794 SUPERFAMILY Homeodomain-like 581 646 IPR009057 -
Gso12g1479 794 Pfam Associated with HOX 363 517 IPR006563 -
Gso12g1479 794 SMART prehox3 358 518 IPR006563 -
Gso12g1479 794 SMART HOX_1 579 643 IPR001356 GO:0003677
Gso12g1479 794 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 766 - -
Gso12g1479 794 MobiDBLite consensus disorder prediction 277 311 - -
Gso12g1479 794 CDD homeodomain 579 640 IPR001356 GO:0003677
Gso12g1479 794 Gene3D - 582 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1479 Gso-Chr12 37845270 37853015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1479 282 649 Homeobox Transcription Factor Family AT5G02030 41.489 3.63e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso12g1479 POX 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1479 - - gmx:100790583 1506.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1479 12 37845270 37853015 Gso11g3363 11 49485655 49493022 GST
Gso12g1479 12 37845270 37853015 Gso12g0638 12 6053366 6060710 PCT
Gso12g1479 12 37845270 37853015 Gso11g1487 11 17303751 17311180 PCT
Gso12g0638 12 6053366 6060710 Gso12g1479 12 37845270 37853015 PCT
Gso11g1487 11 17303751 17311180 Gso12g1479 12 37845270 37853015 PCT