Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1474 ATGAAGCCTCAACTCAACGTTGCTGTTGCTCTTGTTATTAGCTTGCTCTGTATTCAGCACTCATTTTGTGATGAACCTTCTGATACTGGACTAAACAAGTGGAAATGTAGATGCTCTTCATTACAAGGGAACAAGATATACTCTCTTGCTAATTGTTCCAAGTCATGTGATTGCCATCCAGGAACTGTCAGGAAGCCACTAGGTTCAAAGAAACAAATTTCGAGCAAGATTGTAGTAATTTTTCTATCAATATGTGTTATATGCACAACTATTGCATTTCTTACCTCAGTTGTATGTCATGTCTACCGAAGGGACAAAGGTCCTATTCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACAGTAGTACCACCAACTTGATTAGTCATAGGACTTCTTCAGTGCCAGAAACAAAAGTTGCTATAACTTCTCCTATTAGTCATATTACAGGATGCTTTCAGAAGGCCGCTTTGTTGTTTGGGAGCCAAAGAGAAACCTTTCATGGAAATATTATTCAATTTTCGTTTGCTGAACTGGAAAATGCCACTGAAAACTTCTCAACTTCCAACCTAATTGGACTAGGTGGAAGTAGTTACGTTTACCGTGGTCGGCTGAAAGATGGTAGTAATGTGGCAGTCAAGAGAATAAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTTACAGAGATTGAACTATTGTCTAGACTTCATCATTGCCATCTGGTGCCATTGGTGGGATACTGCTCAGAATTAAAAGGAAAAAATGTTCAAAGGCTGCTAGTATTTGAATACATGACTAATGGAAATTTGAGGGACAGGTTAGATGGAATTCTTGGACAAAAAATGGATTGGTCAACTCGCGTTACAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCTGCTGCTCCAAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGAGAGCTGATGACCACCCTAGTTGTTCTGATTCTCCAGCAAGAATGCAAGGAACATTTGGTTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTGAGTCAGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATAAGTGGTCGGCAACCCATCCATAAATCTGCAGGCAAAGAAGAAAGTCTTGTTATATGGGCAACTTCACGCTTACAGGATAGTAGGCGAGCATTAACGGAGTTGGCTGATCCACAATTGAACGGGAACTTCCCTGAAGAAGAGCTGCAGATAATGGCATACTTAGCAAAGGAGTGCTTGCTGTTGGATCCTGACACTCGACCAACTATGAGTGAAGTTGTTCAAATTCTTTCAAGTATTTCCCCGGGAAAATCTAGAAGGAGAAGAACCATTCCAGTGAGCCCTTTTCAGGTTCTTAACTGCAGTGTTCTAGTTTGGACATTGAACATGTTTCTTATCTTTCAAAATTTTTGGTTGATACTTAGACTTATTTTAGCTGCCATTATAGATCATCCTCACTTTGTAATAGAAGCAAATCATATCCTGACTTTTTTTTATGCTGAGCATGTAAAGGAACCAGAGGACTTGGAGAAGCAAAGACAAGCCCCACCAAGTATATTTCCATCTCGTAATTTATTGCCACTAGATATTGACCATAATCTTCATGTGGGGAACGAAAATAAAGATGTACATACAGTTTCATCTGAGCATCTGAAGAGTTTGATGCTCTTTACTTCAAAAGGTGAGAGCTGGCATGCATCAGATGAAGAAATGGTAGATTTAACCGAGCCTCGTTTTGAATCATTTTATATGATAAACGACAATTTCCCTTGA 1881 0.3934 MKPQLNVAVALVISLLCIQHSFCDEPSDTGLNKWKCRCSSLQGNKIYSLANCSKSCDCHPGTVRKPLGSKKQISSKIVVIFLSICVICTTIAFLTSVVCHVYRRDKGPIQSPMISSDKETSYSSTTNLISHRTSSVPETKVAITSPISHITGCFQKAALLFGSQRETFHGNIIQFSFAELENATENFSTSNLIGLGGSSYVYRGRLKDGSNVAVKRIKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGILGQKMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLRADDHPSCSDSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATSRLQDSRRALTELADPQLNGNFPEEELQIMAYLAKECLLLDPDTRPTMSEVVQILSSISPGKSRRRRTIPVSPFQVLNCSVLVWTLNMFLIFQNFWLILRLILAAIIDHPHFVIEANHILTFFYAEHVKEPEDLEKQRQAPPSIFPSRNLLPLDIDHNLHVGNENKDVHTVSSEHLKSLMLFTSKGESWHASDEEMVDLTEPRFESFYMINDNFP* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1474 626 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
Gso12g1474 626 Gene3D Transferase(Phosphotransferase) domain 1 268 481 - -
Gso12g1474 626 CDD STKc_IRAK 193 469 - -
Gso12g1474 626 SMART serkin_6 187 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1474 626 SUPERFAMILY Protein kinase-like (PK-like) 168 466 IPR011009 -
Gso12g1474 626 PANTHER OS01G0253100 PROTEIN 2 59 IPR045271 GO:0004714|GO:0006468
Gso12g1474 626 PANTHER OS01G0253100 PROTEIN 61 496 IPR045271 GO:0004714|GO:0006468
Gso12g1474 626 Pfam Protein kinase domain 189 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1474 626 ProSiteProfiles Protein kinase domain profile. 187 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1474 626 Gene3D Phosphorylase Kinase; domain 1 161 267 - -
Gso12g1474 626 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 61 496 - -
Gso12g1474 626 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 59 - -
Gso12g1474 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1474 Gso-Chr12 37727103 37733095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1474 1 483 Receptor kinase-like Gene Family AT2G28250 53.462 4.52e-179 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Gso12g1474 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1474 - - gsj:114380299 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1474 12 37727103 37733095 Gso12g0633 12 5977808 5984357 PCT
Gso12g1474 12 37727103 37733095 Gso11g1496 11 17444965 17453346 PCT
Gso12g0633 12 5977808 5984357 Gso12g1474 12 37727103 37733095 PCT
Gso11g1496 11 17444965 17453346 Gso12g1474 12 37727103 37733095 PCT