Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1473 ATGGCTTTTGGTAATTCAAGATCTGCAAGGTTTGAAGATGATCCGGAGCTAGCAAAATTTCCTGTTACTAACGGTGACAATGGTGCTAAGATTAAATTCCACATTGATGGCACACAAATACCTGAGCCTAGTTCCAATATGGCTCCGAAAAAGGTGGCAGGGAAGTTCTTGAAAACTAGAATGCTGTCAAGAGTGTTCTCAGAAGACTATGGCAGAGTAAAACGAATAGTGTTAGATCCTAGGGGACAAACCATTCACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTATCTTTGTTTGTGGACCCTTTGTTCTTTTATCTTCCAGTGGTTCGAGATGAAGTGTGCATTGATATTGGAATAACTCTTGAAGTTATCCTCACATTGGTAAGATCAGTGGTGGATGTCTTTTATGTGATTCAGATTTTGATGAAGTTTCGGACGGCTTTTGTTGCTCCTTCTTCAAGGGTTTTTGGGAGAGGAGAACTTGTTTTAGGGTATTATAAGATTGCATTTAGGTACCTCCGCAAGGGTTTCTGGTTAGACTTTGTTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTGTTATCCCAACTCTTAGGGGTTCAACCATGGCAAACACAAAAAATGTCCTTCGCTTTTTCATCATTTTCCAATATATTCCGAGGCTACTTTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACAGGGGTTGTGACAGAGACGGCATGGGCAGGGGCTGCTTACAACCTTATGCTTTACATGCTGGCTAGCCATATTTTAGGGGCTTGCTGGTACCTTCTATCAATCGAACGTCAAGAAGCATGCTGGAGAAGTGTATGTGATTTGGAGAAGTCATTTTGTCAATATGGATTCTTTGACTGCCACAGGGTTAAAGGTGCCCTCAGGGTCTCCTGGTTTATGGCAAGTAATATCACAAATTTATGCTCACCAAATGCAAACCATGACTTCTATCAGTTTGGTATATACGCTGATGCCGTGACTTCCAAAGTTACATCCTCGGCATTCTTCAATAAGTACTTCTTTTGCCTGTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGTCAAGGCCTTCTTACTAGCACATATGTTGGAGAAATAATGGTCGCCATTGTTGTTGCAACCCTCGGATTGGTTCTTTTTGCATTGCTGATTGGTAATATGCAGACATATCTCCAATCAACTACTGTTCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAGCAATGGATGCATCACAGGCAACTACCTCCAGAGCTAAGAGAATCTGTGCGTAAATATGACCAATACAAATGGCTGGCTACACGAGGAGTAGATGAAGAAGCTCTTCTCAAAGGACTTCCCGTGGATCTTCGTAGAGACATCAAGCGCCACCTCTGTCTCGATCTAGTTCGAGGAGTGCCATTATTTGATCAAATGGACGAGAGAATGCTGGATGCAATATGCGAGAGGCTAAAGCCTGCATTGTGCACTGAGGGCATGTTTCTGGTCCGCGAGGGTGATCCTGTGAACGAGATGCTATTCATAATCCGAGGCCATCTAGATTCTTACACCACCAACGGGGGCCGGGCCGGGTTCTTCAACTCGTGCTGCATTGGGCCTGGCGATTTCTGCGGGGAGGAGCTTCTAACATGGGCCTTGGACCCACGGCCCAGTGTGATACTCCCCTCATCCACTCGAACAGTGAAAGCCATCTCAGAAGTGGAGGCCTTTGCACTCATAGCAGAAGACCTCAAGTTCGTTGCGTCACAGTTTAGAAGACTACACAGCAAACAGCTCAGGCATAAGTTCAGGTTTTACTCGCACCAGTGGAGAACTTGGGCCGCGTGTTTCATTCAAGCTGCTTGGAGAAGGCACAAGAAAAGAAAGGAAGTGGCTGAACTAATTAGGGCAAGGGCAATTCATGTTAATGTTGTTGATGAGCCTCAAACTCAAACACCAACCTATGCTAAAAGGGTTGCCAGGAGTACTAGGACAGATTCTGGAGTTGTAAGCTCCTTGCAGAAGCCAGCAGAACCTGATTTCTCTGTTGTTGAATAG 2079 0.4459 MAFGNSRSARFEDDPELAKFPVTNGDNGAKIKFHIDGTQIPEPSSNMAPKKVAGKFLKTRMLSRVFSEDYGRVKRIVLDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGITLEVILTLVRSVVDVFYVIQILMKFRTAFVAPSSRVFGRGELVLGYYKIAFRYLRKGFWLDFVAALPLPQVLIWIVIPTLRGSTMANTKNVLRFFIIFQYIPRLLLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSFCQYGFFDCHRVKGALRVSWFMASNITNLCSPNANHDFYQFGIYADAVTSKVTSSAFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMVAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGMFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCCIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEVAELIRARAIHVNVVDEPQTQTPTYAKRVARSTRTDSGVVSSLQKPAEPDFSVVE* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1473 692 MobiDBLite consensus disorder prediction 660 679 - -
Gso12g1473 692 ProSiteProfiles IQ motif profile. 618 646 IPR000048 GO:0005515
Gso12g1473 692 SUPERFAMILY cAMP-binding domain-like 412 608 IPR018490 -
Gso12g1473 692 SMART cnmp_10 482 613 IPR000595 -
Gso12g1473 692 PRINTS EAG/ELK/ERG potassium channel family signature 132 142 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g1473 692 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g1473 692 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g1473 692 PRINTS EAG/ELK/ERG potassium channel family signature 351 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g1473 692 PRINTS EAG/ELK/ERG potassium channel family signature 395 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g1473 692 PRINTS EAG/ELK/ERG potassium channel family signature 445 452 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g1473 692 Pfam Ion transport protein 88 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso12g1473 692 Gene3D - 90 406 - -
Gso12g1473 692 CDD CAP_ED 482 613 IPR000595 -
Gso12g1473 692 Gene3D Helix hairpin bin 409 473 - -
Gso12g1473 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 49 689 - -
Gso12g1473 692 SUPERFAMILY Voltage-gated potassium channels 79 404 - -
Gso12g1473 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED 49 689 - -
Gso12g1473 692 Gene3D Jelly Rolls 480 600 IPR014710 -
Gso12g1473 692 MobiDBLite consensus disorder prediction 660 692 - -
Gso12g1473 692 ProSiteProfiles cAMP/cGMP binding motif profile. 482 579 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1473 Gso-Chr12 37705824 37710362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1473 54 689 Ion Channels AT2G28260 77.116 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1473 K05391 - gmx:100786868 1396.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1473 12 37705824 37710362 Gso11g3369 11 49549739 49554155 GST
Gso12g1473 12 37705824 37710362 Gso12g0630 12 5942126 5948909 PCT
Gso12g0630 12 5942126 5948909 Gso12g1473 12 37705824 37710362 PCT