Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1467 ATGTCTAAGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTTAATGGTCTGTCAGATGAGATTTTTGATGATGTCATCAACTTTTTTGATTTCCCGCTGGAAGACGTGGATGCTAATGGTGTGGAAGAAGACTGGGATGCTCAATTAAAATGCCTTGAAGACCCGCGTTTTGATGTTTATTCAGCATCATCAGCTGGGCTGTGTGCCGAAACTCAAAATGAGAAGCCCCAACTTGGAATGAAGTTATCTGCTTCTAGTAATGGGATTTCCCCAATAAAACAGCTGGCAAAAGCTCCTGGACCAGCATATGGAAAGACCATTCCCCACCAGAATGTCACTTCCAATGGAAAAGATTTGCATCAATTCCAAACCTACACCTACAGCCCAGTTTCGGTTTTTGAAAGTAGCAGTTCGTCCTCAGTTGAGAATTCCAACTTCGATCGACCTGTCATCCCAGTGAAGCGGGCTCGTAGTAAACGTCAGCGTCCTTCAAACTTCAGTCCTCTATTTTCAATTCCTCTCATCGTTAATTTGCCGGCTGTGCGAAAAGATCAAAGGACAGCAGCCTCTGACTCAGATTTTGGAACAAATGTTGCTGGGAATCTATCAAACAAAGTAAAAAAGCAGAGGAAAAAGGATTTGTCCCTGCTATCAGATGTTGAGATGACGAGATCCTCATCACCAGAGTCAGGTCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAAACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACAGGTCCGGCCGCCTCTTTCCTGAATACCGGCCGGCAGCTAGCCCGACTTTTGTAGCATCGCTGCACTCAAACTGCCACAAGAAGGTTGTGGAGATGAGAAGCAGAGTCATCCAGGAGCCTGTTAGGTGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 981 0.4506 MSKDIANMKDSWFFDNNFNGLSDEIFDDVINFFDFPLEDVDANGVEEDWDAQLKCLEDPRFDVYSASSAGLCAETQNEKPQLGMKLSASSNGISPIKQLAKAPGPAYGKTIPHQNVTSNGKDLHQFQTYTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSNFSPLFSIPLIVNLPAVRKDQRTAASDSDFGTNVAGNLSNKVKKQRKKDLSLLSDVEMTRSSSPESGPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRVIQEPVRCSMLASSNLHGNSVG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1467 326 MobiDBLite consensus disorder prediction 209 241 - -
Gso12g1467 326 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Gso12g1467 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
Gso12g1467 326 PANTHER GATA TRANSCRIPTION FACTOR 26 304 - -
Gso12g1467 326 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Gso12g1467 326 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Gso12g1467 326 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Gso12g1467 326 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Gso12g1467 326 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 304 - -
Gso12g1467 326 Gene3D - 232 312 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1467 Gso-Chr12 37585895 37590537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1467 21 304 C2C2-Gata Transcription Factor Family AT1G08000 39.236 1.91e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso12g1467 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1467 - - gmx:100778675 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1467 12 37585895 37590537 Gso11g3374 11 49612563 49617017 GST
Gso12g1467 12 37585895 37590537 Gso12g0627 12 5893999 5900266 PCT
Gso12g1467 12 37585895 37590537 Gso11g1502 11 17520332 17525227 PCT
Gso12g0627 12 5893999 5900266 Gso12g1467 12 37585895 37590537 PCT
Gso11g1502 11 17520332 17525227 Gso12g1467 12 37585895 37590537 PCT