Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1459 ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTTGGATTTGTCCAAAAACCAAGACCGCGTCGGGCTAAACGTAGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGTGAAGAGACATATAGTGGTGATGTTACTAGTAACTGCACCAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTGAACTTCAGAGCTGAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGTTGCGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCACTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGCGAGGGTACAGGTCATCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCACTGTAAAAATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATTTTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGAGGACATTAACCCCCAGTTAAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGACGATGGGCCAATTCCCGGGTACTTATGTTGGTGCAAACGTAAGAGCATGGTTACTGAAGATTCTGATGGGAGCGATATACTTGATTGA 1230 0.4187 MGDYKSFSFSKMMGCCGCFGFVQKPRPRRAKRSISNLLSQGLLLDGETEGEETYSGDVTSNCTSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETCKLDRSEDENGNKMINEYVREYKIGCGSYGKVALYRSSVDGKHYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGHPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPEDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGDDGPIPGYLCWCKRKSMVTEDSDGSDILD* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1459 409 Pfam Protein kinase domain 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1459 409 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 6 406 - -
Gso12g1459 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Gso12g1459 409 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Gso12g1459 409 CDD STKc_LKB1_CaMKK 123 378 - -
Gso12g1459 409 SMART serkin_6 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1459 409 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 6 406 - -
Gso12g1459 409 ProSiteProfiles Protein kinase domain profile. 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1459 409 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
Gso12g1459 409 SUPERFAMILY Protein kinase-like (PK-like) 113 386 IPR011009 -
Gso12g1459 409 Gene3D Transferase(Phosphotransferase) domain 1 217 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1459 Gso-Chr12 37476128 37482418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1459 123 385 CBL-interacting serine-threonine protein kinases AT5G35410 33.840 3.50e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Gso12g1459 Pkinase 6.6e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1459 K00908 - gmx:100776013 847.81