Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1457 ATGAGTGCTCATCAAAAAGAAAAACACAACGCACCTTCGTCCAAACCAACGGTTTCTCATTCACTTCACAAGGTTGATGATCCAATGAAGGTAACCGATGAAAATGAAACCTTGCGTGCTTCTAATAATCAATGGAAGCGACCGAATCTGCAGCTGGAAATACCGACCAGAACATCGGAAGAGTCTTCTCAGGATCTTGTAAGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGCGACTTCTCGCTCTGTTGATGCTCCAAGGCCTACTTCTTCATCGACCAGAGCCAAATCATCCATGAGAAACATCTTACCGAAATTCGGCTTCCGGAATCGTGCACCATCGCCCGATGTTGAAAAGGTTGTTACTACTGCAGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGCCTTCAATCCCAAGATCAGTGTCTCTCACGAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCGTTGCCAGTGGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTTTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAATACCAAAGAAAAAGGCATAAGGAGAATGGATTCGGTTTTCCGCATTATTCCATCCACTCCTCGCGTAATTGAAGTGAATGAAACAACAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCCGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGATGAGGTTCGGAACCTCCCTGTCACTCTCTTATGGATCCGAAGTGTTCGAACTCAGAATACTAGAGCAAGGTCCGAGCAGGGAGATGATTTCAGGGCTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAACATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGCACTGGGTCTACTCTCCTCCGTAACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGGCAATCCTTCTTGCAACGTTTGCTGGGTTTGGCGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGTCTTCTAGATGGAGAAGAAGATGGCAAGCTTTATCAGAGCTGCAGCGTGGTTCTTCAGCGATGACACAAGAAGGGATATCAAGTCAGAGCTGA 1434 0.4512 MSAHQKEKHNAPSSKPTVSHSLHKVDDPMKVTDENETLRASNNQWKRPNLQLEIPTRTSEESSQDLVRIRMPLTPSPTPSQKKVNFLATSRSVDAPRPTSSSTRAKSSMRNILPKFGFRNRAPSPDVEKVVTTAAQEGSFSGHQEKPSIPRSVSLTKMFTPKIKRTSSLPVEELGRANVESVLCGTLGASPCGRETQGMIARSRSVPVNTKEKGIRRMDSVFRIIPSTPRVIEVNETTKDTENGDDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKDEVRNLPVTLLWIRSVRTQNTRARSEQGDDFRAWQELPVLVIVNMLAYFCFLEQLLVGRMRTKAIFISLPFACALGLLSSVTSSTMVKSRFIWIYASVQFVLVVIFAHIFYPLVGKHAVLAILLATFAGFGVVMSGSSILLESSRWRRRWQALSELQRGSSAMTQEGISSQS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1457 477 ProSiteProfiles Zinc finger RING-CH-type profile. 249 311 IPR011016 GO:0008270
Gso12g1457 477 PANTHER OS02G0165000 PROTEIN 30 469 - -
Gso12g1457 477 Pfam RING-variant domain 257 304 IPR011016 GO:0008270
Gso12g1457 477 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 30 469 - -
Gso12g1457 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 312 IPR013083 -
Gso12g1457 477 CDD RING_CH-C4HC3_MARCH 257 305 - -
Gso12g1457 477 SMART ringv_2 256 305 IPR011016 GO:0008270
Gso12g1457 477 SUPERFAMILY RING/U-box 253 308 - -
Gso12g1457 477 MobiDBLite consensus disorder prediction 20 34 - -
Gso12g1457 477 MobiDBLite consensus disorder prediction 35 62 - -
Gso12g1457 477 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1457 Gso-Chr12 37427564 37431903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1457 245 311 C3H Transcription Factor Family AT2G37950 45.588 9.46e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1457 - - gmx:100782610 935.25