Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1442 ATGATGTCTCAAGAAGCAATACCTGCTCCTTCCAACAATAACAACCTCAGAGACTCCACGGTTCAACTTCATGAACCAAACTCAAACCCTAATCCTAACCCTAATTCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCTACCAACCGATTCATCTGCGAAGTATGCAACAAGGGTTTCCAGAGGGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACTTGCCGTGGAAGCTGCGGCAGAGAAACAAGGAAGAGGTGGTGAAGAAGAAGGTGTACGTTTGTCCAGAGAAGACTTGTGTGCACCACGACCCTTGCAGAGCCCTGGGGGACCTCACCGGGATAAAAAAGCACTTCAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGTACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGGGCTTTTTGTGACGCCATGGCGGAGCAAAATGCGAGGCTTCCGTCGGTTTTGTCAAACCTTGGAAGCGAGATTTTGATGAATGCTGCTCAAGCTCCAAGAGTAATGCCACAGGGTTTACAATTACATGGGTTTCATTCAGAGTTTGGTGGGCCAGGCCAAGAACCATACATTGGAAATTTTGCGGATGTGAACCATCATGAGCATAAGCTAAGGATGCCACTATGGCTAGACCAGACCAATAATCCTCTTCAGCTTAATCATCATCATCCTCTAAGCGTTTCAAGCAACTCTTCAAGTTTGTTCTCACCAGGAACAACTTTGGCTGAAGTGAATAACATGTTTGGGACATCGTCGTCGTCACAGGGACAGTGGCTGAATTACCGATACCCCCCAGAAGCAATATCATTTACACATGCCAATGTTTCTATGGCTCATGGGCTGAAGCTAGAGCAAGAAGAAAACAAAGGAAACTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTGCAAGGATATTGAGTGATAATAATAATTCGGCCTTCGACAACTCCAACTTTGGCTTGTTGGACCCGAACAACATCTCAAGCACGTCCAGCAACAACAACCGCCACAACAATAACGTGGTTGAAATTCAGAAATTGTTCAGGCAAGGAAACCAGCTGGCTGAGAACTTCAACCACATCGTGAATTCCCAAGCAAGCACCAACATTGGAGATCAAGGGTTTTCATTGAGTAGCATGAATAAGGGCTTGGAGCACATGGTGATGCCGCGGATTGAAGAGTGGGAAAGTGGAGAACCAAAAAGAATGGAGAATCAACAGGTACTACAATCAAGTACTTCCAACACCGAAGAGCACTTAACCAAAGATTTCATGGGTGTTGGAGCAGTGATGAACCTGCAAAGCCAGTTCCATGGACATTACTGA 1503 0.4637 MMSQEAIPAPSNNNNLRDSTVQLHEPNSNPNPNPNSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRNKEEVVKKKVYVCPEKTCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMAEQNARLPSVLSNLGSEILMNAAQAPRVMPQGLQLHGFHSEFGGPGQEPYIGNFADVNHHEHKLRMPLWLDQTNNPLQLNHHHPLSVSSNSSSLFSPGTTLAEVNNMFGTSSSSQGQWLNYRYPPEAISFTHANVSMAHGLKLEQEENKGNLSHSVSSLYPSHMESARILSDNNNSAFDNSNFGLLDPNNISSTSSNNNRHNNNVVEIQKLFRQGNQLAENFNHIVNSQASTNIGDQGFSLSSMNKGLEHMVMPRIEEWESGEPKRMENQQVLQSSTSNTEEHLTKDFMGVGAVMNLQSQFHGHY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1442 500 MobiDBLite consensus disorder prediction 1 40 - -
Gso12g1442 500 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Gso12g1442 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Gso12g1442 500 Gene3D Classic Zinc Finger 46 119 - -
Gso12g1442 500 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 27 427 - -
Gso12g1442 500 Gene3D Classic Zinc Finger 122 201 - -
Gso12g1442 500 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Gso12g1442 500 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Gso12g1442 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 427 - -
Gso12g1442 500 MobiDBLite consensus disorder prediction 1 50 - -
Gso12g1442 500 SMART c2h2final6 144 164 IPR013087 -
Gso12g1442 500 SMART c2h2final6 109 139 IPR013087 -
Gso12g1442 500 SMART c2h2final6 67 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1442 Gso-Chr12 37183827 37187343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1442 29 201 IDZ Gene Family AT3G50700 82.184 1.01e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1442 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1442 K25870 - gmx:100815213 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1442 12 37183827 37187343 Gso11g3392 11 49801940 49804896 GST
Gso12g1442 12 37183827 37187343 Gso12g0578 12 5175391 5178205 PCT
Gso12g1442 12 37183827 37187343 Gso11g1266 11 11725913 11728938 PCT
Gso12g0578 12 5175391 5178205 Gso12g1442 12 37183827 37187343 PCT
Gso11g1266 11 11725913 11728938 Gso12g1442 12 37183827 37187343 PCT