Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1440 ATGTCCGTCATCGACATTCTCTTCCGCGTGGATGACATATGTAAAAAATATGACAAATACGACATCGATAAGCAGCGCGAGCTCAACGCCTATGGCGACGACCTCTTCGCTCGCCTCTACGCTGCTGTCGAATCCAGCATACAATCCGCTCTCAATAAATCCGAGGTTGCTTCCACGGAGAAGAACAGGGCATCTGCTGCGGCTTTGAATGCGGAGGTTCGTCGAACCAAAGGTAGACTCATGGACGAGCTTCCTAAACTCCGCAAATTGGTCCATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATACGTCAGGATCTTGTTCTGGCATTGCCAGAGAGAATCCAAGCAATACCAGATGGTATTTCTGGTGCTGCTGTTCAAACTGCAGGATGGACTGCTACCTCATCTCAGCCGCATATCAAGTTTGATTCATCAGAGGGGCATCTTGACAGTGATTATTTCCAGCAAAGTGAAGAATCCAGTCAGTTCCGACAAGAGTATGAGATGCGCAGGACGAAACAGGATGAAGGACTTGATATCATATCAGAGGGACTGGAAACCTTGAAGGATCTGGCACAGGATATGAATGAGGAAATTGATCGGCAAGTTCCTTTAATGGATGAAATTGACAGAAAGGTGGATAGGGCAGCAGCTGATGTGAGAAACACTAACGTAAGGCTGAAGAAAACTCTCACCGAGATAAGGTCTAGTCGAAATTTCTGCATCGACATCGTTCTGCTCTGTGTTCTTCTTGGAATCGTTTTGTATTTATACAATGCTCTGAGGTGA 798 0.4599 MSVIDILFRVDDICKKYDKYDIDKQRELNAYGDDLFARLYAAVESSIQSALNKSEVASTEKNRASAAALNAEVRRTKGRLMDELPKLRKLVHKKVKGLTKEDMAIRQDLVLALPERIQAIPDGISGAAVQTAGWTATSSQPHIKFDSSEGHLDSDYFQQSEESSQFRQEYEMRRTKQDEGLDIISEGLETLKDLAQDMNEEIDRQVPLMDEIDRKVDRAAADVRNTNVRLKKTLTEIRSSRNFCIDIVLLCVLLGIVLYLYNALR* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1440 265 PANTHER SYNTAXIN-72 1 262 - -
Gso12g1440 265 Pfam SNARE domain 208 258 IPR000727 -
Gso12g1440 265 SMART tSNARE_6 166 233 IPR000727 -
Gso12g1440 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Gso12g1440 265 Gene3D - 171 232 - -
Gso12g1440 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso12g1440 265 SUPERFAMILY SNARE fusion complex 164 232 - -
Gso12g1440 265 CDD SNARE_Qc 176 232 - -
Gso12g1440 265 Coils Coil 181 201 - -
Gso12g1440 265 PANTHER SYNTAXIN 1 262 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1440 Gso-Chr12 37145777 37149656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1440 1 265 SNARE and Associated Proteins AT3G09740 67.041 1.78e-135 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1440 K08506 - gmx:100777251 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1440 12 37145777 37149656 Gso11g3394 11 49817335 49820445 GST