LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g1435	ATGGAAATTGATCTGAATGATGCAGTGACGAGTGAGGCTGAAAAGAGTGCGTCTTGCAATGGGGAGTGTGAGAAAGGTGCTGCTTTGTCATCTCCAACATGTTCATCTTCTGGCTCCTCCTCCACACGTGTGTCTTCTTCTTATATTGAGCTTTGGCATGCTTGTGCTGGCCCCCTTACTTCCCTCCCGAAGAAAGGGAATGTGGTGGTGTATTTCCCACAAGGGCACTTAGAACAAGCTGCATCCTTCTCTCCCTTTTCACCAATGGAGATGCCAACCTATGATCTTCAGCCACAGATCTTTTGTAGAGTTGTCAATATTCAGCTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATATGGAGGGAAAAGAGCTTGAGAAATTGGGAGCAGATGAAGAGGGAAATGAAACAACACCTACAAAGTCAACCCCTCACATGTTTTGCAAAACTCTTACCGCCTCAGATACCAGCACTCATGGGGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGAAGCAAAGACCTTCTCAAGAGCTTGTTGCCAAAGACTTGCATGGTGTGGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTTAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGGAGAGCTGCTCGACCAAGAAATGGTCTTCCCGAATCAATTGTTGGTAGCCAGAGTTATTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCAGCGAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGCTGTGCCCTACCAAAAATATATCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCCGAAAGAAGGTGCACTAGTGGCATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAATCATCAAGATAGAGTGTCTCCCTGGGAGGTTGATCCTTCTGCATCTCTCCCTCCCCTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCTGGCTGCCGCACCCAATCACCTCACCACTGGAAGCAGTGGATTTATGGACTCTGAGGAGTCGGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCACCCTAATCTTGCTTCAACTGGAGTGAGAAAGATTGCTGCTGCTGAGTTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCACGGAAACTAACATGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCGTTTAGATCCCTGGCAGGAAAGGTTGATTTGAACTTCGGTTCTTGGGGCAAACCCAATGTCAGTTACACAAATTACAACCTGCATCAGGCAACCAAACCTAACTTTCACTCTTTTGGACCAGAAGTTGTTCAAACTGCATATTTCCCTTATGGTGATATTCACAAAGCTGGTCAAGGTAGCAGCATGTTGTGCTCTAATCCAACCAATTTCCAACGAGAGGATATCCCATTTAACACTCCTTCCATTCAGTCAGGCATCACAATCCCAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCTTTAGGGGCAAACATGAGGATTCCAAATGATGACAATTTCAAGGGGAAGGTAAACGCATGTAAACTATTTGGATTTCCCTTGTCCAGGGAGACTACCGCCCAAAATTTACAGAACTCTTCCAAAAGAAGCTGCACAAAGGTTCACAAGCAAGGTAGCCTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAATAGATCCTAATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAACGACATTATGGTTGTGGGGGATGATCCGTGGCATGAGTTCTGTGATGTGGTATCCAAGATTCATATACATACACAAGAAGAGGTGGAGAAGATGACAATTGGGATGATGATCAATGATGATAGCCAGAGTTGTTTGGAACAGGCACCAGTGATGGTGGAGGCTTCAAAGTCTTCCTCTGTGGGTCAGCCAGATTCTTCTCCAACAGTGGTTAGAATGTAG	2379	0.4447	MEIDLNDAVTSEAEKSASCNGECEKGAALSSPTCSSSGSSSTRVSSSYIELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFSPMEMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYMEGKELEKLGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKKQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQSYYPNFLSSVANAISAKSMFHVFYSPRASHADFAVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEVDPSASLPPLSIQSSRRLKKLRPGLLAAAPNHLTTGSSGFMDSEESVRSSKVLQGQENTGFMSLYYGCDTVTKQPEFEIRSPSHPNLASTGVRKIAAAEFMRVHPSSYAGFTETNMFPRVLQGQEICPFRSLAGKVDLNFGSWGKPNVSYTNYNLHQATKPNFHSFGPEVVQTAYFPYGDIHKAGQGSSMLCSNPTNFQREDIPFNTPSIQSGITIPNEQKLQDNISGAASLGANMRIPNDDNFKGKVNACKLFGFPLSRETTAQNLQNSSKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFSMEGLLIDPNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIHTQEEVEKMTIGMMINDDSQSCLEQAPVMVEASKSSSVGQPDSSPTVVRM*	793

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso12g1435	792	Gene3D	-	659	752	-	-
Gso12g1435	792	Gene3D	-	160	264	IPR015300	-
Gso12g1435	792	Pfam	Auxin response factor	288	370	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
Gso12g1435	792	Gene3D	-	326	398	-	-
Gso12g1435	792	Pfam	B3 DNA binding domain	162	263	IPR003340	GO:0003677
Gso12g1435	792	PANTHER	AUXIN RESPONSE FACTOR	10	780	-	-
Gso12g1435	792	ProSiteProfiles	B3 DNA-binding domain profile.	162	264	IPR003340	GO:0003677
Gso12g1435	792	SUPERFAMILY	DNA-binding pseudobarrel domain	153	274	IPR015300	-
Gso12g1435	792	SMART	B3_2	162	264	IPR003340	GO:0003677
Gso12g1435	792	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	10	780	IPR044835	GO:0003677\|GO:0006355\|GO:0009725

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g1435	Gso-Chr12	37048489	37055027	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g1435	44	792	B3 DNA Binding Superfamily	AT5G60450	61.427	0.0	870

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Gso12g1435		AUX_IAA	6.1e-07	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g1435	-		-	gmx:100812909	1587.01

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso12g1435	12	37048489	37055027	Gso11g3397	11	49862813	49868916	GST
Gso12g1435	12	37048489	37055027	Gso12g0582	12	5233376	5241167	PCT
Gso12g1435	12	37048489	37055027	Gso11g1262	11	11650837	11657680	PCT
Gso12g0582	12	5233376	5241167	Gso12g1435	12	37048489	37055027	PCT
Gso11g1262	11	11650837	11657680	Gso12g1435	12	37048489	37055027	PCT

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