Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1434 ATGGATTGGGTAGCCAGTTGCAAGGAAAAATTGCAATATTTCCGTTTAAAAGAGCTCAAAGATGTGCTCACTCATTTGGGACTTTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGGATTTTAGCTATTCTCTCAGAGGACCAAGTTTCCAAATTGTGGACCAAGAAGAATGCTGTTGGAAAACAACAAGTGGCCAAATTAGTGGATGAGACGTATAGAAAGTTGCAGGTATCTGGGGCCATTGATCTATCATCAAAGGGACAGGGTGCCTCAGATAGCAGTAATGGGAAAATTAAAGGTGAAATTGACAATTCCTTTCAATCAGATACGAAGATTCGCTGTCTCTGTGGAAATGTATTAGATACAGAGCCATTGGTCAAGTGTGAAGATACAAAATGCCATGTGTCGCAGCACATCAACTGTGTTATTATTCCAGAGAAACCTATGGATGGAATCCCACCCGTTCCTGATAAATTCTACTGTGAAATATGTCGACTCGATCGGGCAGACCCGTTTTATGTTTCAGCAACACACCTATTGTTTCCAGTGAAGTTGACCACAACCAATATTCCCACCGATGGAACCAATCCGGTACAGAGTGTGGAAAGAACGTTTCAACTCACAAGAGCAAACAAGGAGCTGGTATCAAAATCAGAATATGATGTTCAGGTTTGGTGTATGCTTTTGAATGACAAGGTTTCATTCAGGATGCAATGGCCACAATTTGCAGATCTAAAGGTCAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGTGATACTGGTCCAGTTATCACGCCATATACAAAGGACGGAATTAACAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAGGTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCTCTTGCACGTGTCTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTTGTTTCAGATACTTTTAGCATCAATCTCCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATTGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATGAACGGTCAAGGAAGTGGCAGTGCCCCATATGCGTTAAAAATTATGCTTTGGAGAATATGATTATTGACCCTTACTTCAATCGCATCACTACTCTGATGAAAAATTGTGGTGAAGAGATTGCAGAGGTTGAGGTGAAGCCTGATGGTTGTTGGCGTGTCAAGGCTAAGAATGAAAGTGAACGCCAGGAGTTGGGGACTCTTGCTCAATGGCACCATCCTGATGGATCCCTCATTGTTTCGACTGATGAAGTCAAGAGCATGGAAAATTTAAAGCTCAAACAGGAAGGTCTTTCAGATAGTCCTATTGCTGGCTTAAAACTTGGCATCAGGAAGAATAGTAATGGTGTTTGGGAAGTCAGCAAACCTGAGAACACAAACACCTCTTCTGGTAATAATAGATTGAATGAGGATTTTGAAAATCATGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGCCGGGATGAAGATGATCCTAGCATAAATCAGGGTGGTGGTGAGCATATTGGTTATTCTACTACCAATGGGATTGAAATGAATTCTGTGTTTAACAATAATATAGATTCAGCTTATGGATATACTGTTAATAACGCATCTGCTACGATGGGTGATGCAAAAATTATTATTCTTAGTGATTCAGAAGAAGACAGTGATGTATTGATTTCTCATACTCCTATATCTGGGTACAGAAATAATCAAACTAGTGATGCAGTTGATGTTTACTCCGTGCTACAGCCTGGAATTATTGATCCATATACAGAAGATCACAATCCTGGTGGAAATCCGACCTTGGGAGTTTTTAATAATCCCAGTGAAGATGATTTTGGGATGCCCCCCCTCTGGCCATTGCAATCTGGAACTCCGGCAGTCTCAGGATTCCAATTATTCAGTTCTGAAGTGGAGGATGTTTCAGATGCATTGATTGATTTGCATCATGGCAATATTAATTGTTCCTCATCATTGAATGGTTATATGTTGGCTCCTGATACTGCTTTGGGATCTAGCACTCTGGTACCAGATTCCTCAGCAGGTCGACCTGATGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCAAGAGAAGATCCATCCCTTCAGATTTTTCTCCCTCCAAAACCAGCAGAATCATCTATGCAGCATGAACTGAGAGATCATGCAGACATGTCAAAAGGTGTCTTCATTGAGGATTGGATCTCTCTTCGTCTTGGAGGCAGTACCAGTGGCAGTAATGGTGACATTTCCACTGCAAATGGATTGAATTCCAGACAGCAAATTACACCCAGAGAAAATGCTGGAGATTCTTTGACAGATGCCGCTCCTTTGCTTCCTGGTATGAATGATGTTAGATCTGAAAAGGCAAGTAGGCAAAGATCAGATATCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCCCCGCCCAAATCTTCCTTCAGATTCCGAGTAG 2649 0.4171 MDWVASCKEKLQYFRLKELKDVLTHLGLSKQGKKQDLVDRILAILSEDQVSKLWTKKNAVGKQQVAKLVDETYRKLQVSGAIDLSSKGQGASDSSNGKIKGEIDNSFQSDTKIRCLCGNVLDTEPLVKCEDTKCHVSQHINCVIIPEKPMDGIPPVPDKFYCEICRLDRADPFYVSATHLLFPVKLTTTNIPTDGTNPVQSVERTFQLTRANKELVSKSEYDVQVWCMLLNDKVSFRMQWPQFADLKVNGLPVRAINRPGSQLLGANGRDTGPVITPYTKDGINKISLTGCDARIFCLGVRIVKRLSMPEVLSMIPEESDGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHIGCFDLEVFVEMNERSRKWQCPICVKNYALENMIIDPYFNRITTLMKNCGEEIAEVEVKPDGCWRVKAKNESERQELGTLAQWHHPDGSLIVSTDEVKSMENLKLKQEGLSDSPIAGLKLGIRKNSNGVWEVSKPENTNTSSGNNRLNEDFENHEHVIIPMSSSDTGSGRDEDDPSINQGGGEHIGYSTTNGIEMNSVFNNNIDSAYGYTVNNASATMGDAKIIILSDSEEDSDVLISHTPISGYRNNQTSDAVDVYSVLQPGIIDPYTEDHNPGGNPTLGVFNNPSEDDFGMPPLWPLQSGTPAVSGFQLFSSEVEDVSDALIDLHHGNINCSSSLNGYMLAPDTALGSSTLVPDSSAGRPDDDLNGGLVDNPLAFPREDPSLQIFLPPKPAESSMQHELRDHADMSKGVFIEDWISLRLGGSTSGSNGDISTANGLNSRQQITPRENAGDSLTDAAPLLPGMNDVRSEKASRQRSDIPFSFPRQKRSVRPRPNLPSDSE* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1434 882 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Gso12g1434 882 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Gso12g1434 882 SUPERFAMILY SAP domain 1 64 IPR036361 -
Gso12g1434 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 447 IPR013083 -
Gso12g1434 882 SMART PHD_3 114 166 IPR001965 -
Gso12g1434 882 MobiDBLite consensus disorder prediction 541 567 - -
Gso12g1434 882 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 817 - -
Gso12g1434 882 MobiDBLite consensus disorder prediction 734 754 - -
Gso12g1434 882 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Gso12g1434 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 173 IPR013083 -
Gso12g1434 882 Gene3D SAP domain 1 74 IPR036361 -
Gso12g1434 882 Pfam SAP domain 14 42 IPR003034 -
Gso12g1434 882 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Gso12g1434 882 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Gso12g1434 882 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 817 - -
Gso12g1434 882 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Gso12g1434 882 SMART sap_9 11 45 IPR003034 -
Gso12g1434 882 MobiDBLite consensus disorder prediction 829 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1434 Gso-Chr12 37034462 37046866 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1434 - K22403 gmx:100811996 1768.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1434 12 37034462 37046866 Gso11g3398 11 49871867 49881006 GST
Gso12g1434 12 37034462 37046866 Gso12g0584 12 5263600 5272590 PCT
Gso12g1434 12 37034462 37046866 Gso11g1259 11 11622891 11633569 PCT
Gso12g0584 12 5263600 5272590 Gso12g1434 12 37034462 37046866 PCT
Gso11g1259 11 11622891 11633569 Gso12g1434 12 37034462 37046866 PCT