Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1428 ATGAGGCATGGTGAAGCCAATTCGGGCCAGGGTCCCAAGGTCAATTTGTTGCAGCATGCCAATGCTCTTGAGAATTTCTCCTCCCAAGCCAAATTTTTGAGCTCCACTTTTCTGTTTTCTGTCCCACCTAAGAAGCCACACCACGAACAACCAAACCCCGGGTTTGTATTTCGACGAAGTGAAACTATTCAAGGTTCACAGAGAGTACAGGTCGAGAAGGCTTTGGCTGCTCATTCAAGTCTACAAAATTCTAGTAGGAACTATGTCCAACCAGGAAAAACTCAGGTTACTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCATGGAGGCTATGAGAATGGCAACCATAGATGTCCTGATGTTGCTGCAACTCCAATTGTTAACAATCATAATTCTCGGGGTTTGGATGGTTCGGTAAACAATCATACTAATTACACAGGCCAAATCAACAAGTCTTCCAACTGCATGGCTGTAGATATTGATGATGATGATTCTCTCTTTAAGAACATTGATGTTGACCAAATTGTTGAGGACTATTGCACTCCCAAACCATCAATATCCAAGCTTCCTCCTATAACACCAACTGCCGATAAAGATAATTTTGCTAGACAGGGGGATGATGTTTTGCCACCGGAACTGTGTTTAGATTGCGTGCATGGGTACATGTTAGGGTTTTGCCCTGAAGCAGCTAGCCATTTGCAGGATATGAAGGATAATCTAATTGCAATCTTTAATGAGCTGCTTGACAATGGTGAAAACCTCAATTCTACACAGATAGCAAAGCTTCGCCATGATAGGTCACAGCTCAATAAGCAAATTCAGCAGCTTGAAAAATATATTCATTCTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACTGTCCTCTGTAATGGATCTAAGAGATATGATACTGAGGCTTATATGGGTAATGGGACATATGGGTCGTCGTTCCAGTCTCTTCCACCTTTTTCTGTAGATAATTGTAGCATGCCATCAGGTTCCGTGGGGAGGGAAGTGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCTACGATTTTTCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGCGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACATATCAGTTACCAGCTCTTATTCATCCCGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCGGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGACATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTTACACCTGAAAAGGTTGCCAGAAGTGATAATCTTCTGCGACACTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATCGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCATTAACAGCTACAGCAACAGCTAGTGTAAACGAAGATGTCGTACAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTAAGGTATTCTGTTATCCCCAAGACCAAAAAGTGTTTAGAGGACATTGACAAATTCATTAGGGAGAATCATTTTGATGAATGTGGCATTGTCTATTGTCTTTCACGAATGGACTGTGAAAAGGTAGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGATCCTGTTCAGCGTGCCTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATCAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACATTCATCCTGTGTATTATATTATACCTACAGTGATTATATACGAGTTAAGCATATGTTAAGCCAAGGAGCAATAGAGCAAAGTTCCATGACATCTGGATACAACCGTTCAAATATGATAAATTCAGGAAGGATACTAGAAACAAATACTGAAAACCTTGTGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCTGAAAACATGTGATAATTGCTTGAAGATCACAAGTTTCATTGAAAAGGATGTCACAGAGATTGCAAAGCAATTGGTTGAACTTGTTAAGCTAACAGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGGCATGAGAGTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTGGAGGATTTTCTTTGGGAGGAAGTAAAAAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGAGCCCAAGATCCATAATCTGTTTGCTGGGCAGAGAATTATATTGAGATTCCCATCCTTGGTAAAGGCATCAAAACCAGGGAAATCTGATGCAACTCCAGCTAAGGGTTCTCTGACTTCTGGAAAGCTGAATGTTATGCAAATTGACCCTCCTTCACCTCAAACTGAAGTGGATGATATTCTTTCAGCTAAGTTATACAATGCCCTGCGGTTGTTGAGGAAAAGTCTTGTTACAGAAGCTGGAGACGGTGTCATGCCTCACCACATATTTGGTAATGCTACGTTGCTTCTGATAAGCAAGAGAGTGCCGAGAAGAAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGGGATCAGTTACTAGAAAGCATTGAAAAAACCATAAATGAACATTACAAGTTGGACAAAGTCAGTAGCGGCAGCAAAGGAAGTTCAGATTCTACCAAAAAGAGACGACTGTCAAATGGAAATCCAGATGCAAATGCTGAGGATGATGACGCCCCCACCAAAAGTACAGGTCGTTCAAAGAAAAGGATGGTAAAGAGACAAAACAGAAAAGCTGTAATATATGATTCTCCAGAGGAAGATTATTTTCAAGGATGCCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGATGCATTAGATCAAGTGACTTGTAAAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3459 0.4045 MRHGEANSGQGPKVNLLQHANALENFSSQAKFLSSTFLFSVPPKKPHHEQPNPGFVFRRSETIQGSQRVQVEKALAAHSSLQNSSRNYVQPGKTQVTPQLHEDRRTTSFHGGYENGNHRCPDVAATPIVNNHNSRGLDGSVNNHTNYTGQINKSSNCMAVDIDDDDSLFKNIDVDQIVEDYCTPKPSISKLPPITPTADKDNFARQGDDVLPPELCLDCVHGYMLGFCPEAASHLQDMKDNLIAIFNELLDNGENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTEAYMGNGTYGSSFQSLPPFSVDNCSMPSGSVGREVFIPKIIEVNYIEGSGDKRWSSYDFSWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIHPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQDILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVNEDVVQALGLVNCIIFRQSFNRPNLRYSVIPKTKKCLEDIDKFIRENHFDECGIVYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPVQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQHSSCVLYYTYSDYIRVKHMLSQGAIEQSSMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCLKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHESVSLHGAGKHLAKGEASRILHHLVVEDFLWEEVKKSDFYGSVSSILKVNEPKIHNLFAGQRIILRFPSLVKASKPGKSDATPAKGSLTSGKLNVMQIDPPSPQTEVDDILSAKLYNALRLLRKSLVTEAGDGVMPHHIFGNATLLLISKRVPRRKEELLDINGIGKAKVSKYGDQLLESIEKTINEHYKLDKVSSGSKGSSDSTKKRRLSNGNPDANAEDDDAPTKSTGRSKKRMVKRQNRKAVIYDSPEEDYFQGCPDEDLDFDIIEIDALDQVTCKNAAGRVLPQWTAS* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1428 1152 ProSiteProfiles Rhodanese domain profile. 626 661 IPR001763 -
Gso12g1428 1152 Pfam Helicase conserved C-terminal domain 610 716 IPR001650 -
Gso12g1428 1152 Pfam DEAD/DEAH box helicase 405 573 IPR011545 GO:0003676|GO:0005524
Gso12g1428 1152 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 411 586 IPR014001 -
Gso12g1428 1152 Gene3D - 594 813 IPR027417 -
Gso12g1428 1152 MobiDBLite consensus disorder prediction 1062 1090 - -
Gso12g1428 1152 SMART helicmild6 636 717 IPR001650 -
Gso12g1428 1152 Pfam HRDC domain 973 1041 IPR002121 GO:0003676
Gso12g1428 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 860 IPR027417 -
Gso12g1428 1152 CDD DEXHc_RecQ 394 593 - -
Gso12g1428 1152 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 525 534 IPR002464 -
Gso12g1428 1152 Gene3D - 817 926 IPR036388 -
Gso12g1428 1152 SUPERFAMILY HRDC-like 973 1046 IPR010997 GO:0000166|GO:0044237
Gso12g1428 1152 SMART ultradead3 399 602 IPR014001 -
Gso12g1428 1152 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 758 IPR001650 -
Gso12g1428 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 735 IPR027417 -
Gso12g1428 1152 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 102 1119 - -
Gso12g1428 1152 PANTHER DNA HELICASE RECQ FAMILY MEMBER 102 1119 - -
Gso12g1428 1152 MobiDBLite consensus disorder prediction 1052 1103 - -
Gso12g1428 1152 CDD SF2_C_RecQ 594 726 - -
Gso12g1428 1152 Pfam RQC domain 816 928 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso12g1428 1152 ProSiteProfiles HRDC domain profile. 969 1051 IPR002121 GO:0003676
Gso12g1428 1152 Gene3D - 367 593 IPR027417 -
Gso12g1428 1152 Coils Coil 261 281 - -
Gso12g1428 1152 Pfam RecQ zinc-binding 728 810 IPR032284 -
Gso12g1428 1152 SMART RQC_2 819 929 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso12g1428 1152 Gene3D HRDC domain 966 1053 IPR044876 -
Gso12g1428 1152 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 395 870 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1428 Gso-Chr12 36897248 36904974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1428 625 740 Eukaryotic Initiation Factors Gene Family AT3G19760 22.414 1.53e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1428 K10901 - gmx:100817867 2298.47