Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1417 ATGTCTGATATAAACATCAATCATCCACTACCAACACATGAGGTGGTGACCTACAAGGAGTGTTTGCATAACCATTCAGCAGCACTTGATCATGTCACCTATGATGGTTGTGTCAAGTATATCGCCGGTGAGGATGCTCTCTTGTGTGCTTGTTGTGGCTGCCGCCGAAACTTTCACCATAAGAACACCATTTTCACTGCTGAGCCCCAAACTCAAACACCGGATCAAGTGCAAGAGATGAGGTCCAAGAGGAAGAAGAGGACTACCTTCTCGTCAGAGCAGAAGAACAAGCTGATTAGGTTTGCTGAGAGTGTGGGGTGGAAACCTCGAAAGGAAAAGAAGGACGAAATCGAAAGCTTCTGCTCTGAGATGGGAATCACCCGTAGGAAGTTCGTTGTATGGCTCAGCAACAACCGTCACCAGGCAATCAATGATGCTTAG 441 0.4694 MSDININHPLPTHEVVTYKECLHNHSAALDHVTYDGCVKYIAGEDALLCACCGCRRNFHHKNTIFTAEPQTQTPDQVQEMRSKRKKRTTFSSEQKNKLIRFAESVGWKPRKEKKDEIESFCSEMGITRRKFVVWLSNNRHQAINDA* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1417 146 Pfam ZF-HD protein dimerisation region 16 63 IPR006456 -
Gso12g1417 146 Gene3D - 67 144 - -
Gso12g1417 146 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 142 - -
Gso12g1417 146 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 16 142 - -
Gso12g1417 146 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 62 IPR006456 -
Gso12g1417 146 MobiDBLite consensus disorder prediction 72 92 - -
Gso12g1417 146 SUPERFAMILY Homeodomain-like 74 141 IPR009057 -
Gso12g1417 146 ProSiteProfiles 'Homeobox' domain profile. 81 145 IPR001356 GO:0003677
Gso12g1417 146 MobiDBLite consensus disorder prediction 78 92 - -
Gso12g1417 146 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 83 139 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1417 Gso-Chr12 36789129 36789569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1417 16 139 ZF-HD Transcription Factor Family AT4G24660 30.539 6.30e-23 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso12g1417 ZF-HD_dimer 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1417 - - gmx:102666836 311.227