Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1414 ATGGAAGAGATGGAGTTTGATTATGAAGAGGTTGTAAAAGCAACGGAAAACTTCAACCCTAGAAGAATCATAGGCAAAGGAAGCCATGGCATGGTCTACAAAGGCGTTCTTTTCAACGACAGATTGCAGGTTGCTGTGAAGAAGCCATCTCAAGGCCTTGAATCACTCCACAACAACTCCAAGCTCGAAAACGAAATTCGAGTTCTATCTTCTCTACGCGAAAGTCCTCATGTGGTTAATCTTCTGGGGACGAGTAGCTATAATGATCACAAGAAGCTCATCGTGATGGAGCTCATGCCCAATGGTTCCCTCCATGACTTGCTCCATGGCCATGCTAATAAAACCACGTGGCCAAAACGCGTTGAAATCGCCATGCAAATTGCTCGTGCAGTTCAGTTTCTTCACGAAGCTGTAGTGATTCACAGAGACATCAAGTCCTCTAACATCTTGTTTGATTCACATTGGAATGCTAAGTTGGCAGATTTTGGACTCGCGGTGAAAGGAGGATTGAGTGAACCGGGTCCTGCTCCCGCAGGGACAATAGGGTACATAGACCCATGTTACACCACCCCAGATAAACTTAGCACCAAAAACGACATTTTCAGCTTTGGGGTTGTGCTGTTGGAGATCATAAGTGGTAGAAAAGCCATTGATGTGTGCAAAACGCCGGCTTCAATTGTGGAGCGGGTGAAGACGAGTGATGAGTTGAAAGAATTTTGTGACACGAGAATGCCACTGCCACCGAATTACATGGTTGGCAGCGTCACTCGCTTGTTAAGCTTTGCTGCACGATGTGTGTCACTAAATGAAGAAGAACGTCCTTGGGCAGGGGAAGTTGTTATGGGAATGGAAATGGAGTTAAATTGCTTCTTCAGAGTCCCTGCTTGGAGATTATGCGTTTTGAAGGGTGTGGTGTGGTTCAGAAACAGAAAGAGGAGGAAGAAGCCTTTTGTGAGTATTATAAGTGTGTCAAGTGGGAAGAAGAAGTCATCGATGACCATGACCATCAAGGACGTTTTGGCTGATCTTACATTCCATTCTTGA 1044 0.4531 MEEMEFDYEEVVKATENFNPRRIIGKGSHGMVYKGVLFNDRLQVAVKKPSQGLESLHNNSKLENEIRVLSSLRESPHVVNLLGTSSYNDHKKLIVMELMPNGSLHDLLHGHANKTTWPKRVEIAMQIARAVQFLHEAVVIHRDIKSSNILFDSHWNAKLADFGLAVKGGLSEPGPAPAGTIGYIDPCYTTPDKLSTKNDIFSFGVVLLEIISGRKAIDVCKTPASIVERVKTSDELKEFCDTRMPLPPNYMVGSVTRLLSFAARCVSLNEEERPWAGEVVMGMEMELNCFFRVPAWRLCVLKGVVWFRNRKRRKKPFVSIISVSSGKKKSSMTMTIKDVLADLTFHS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1414 347 SUPERFAMILY Protein kinase-like (PK-like) 6 297 IPR011009 -
Gso12g1414 347 Pfam Protein kinase domain 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1414 347 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Gso12g1414 347 SMART serkin_6 18 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1414 347 Gene3D Transferase(Phosphotransferase) domain 1 99 289 - -
Gso12g1414 347 PANTHER - 5 340 - -
Gso12g1414 347 PANTHER OS01G0750732 PROTEIN 5 340 - -
Gso12g1414 347 ProSiteProfiles Protein kinase domain profile. 18 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1414 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Gso12g1414 347 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1414 Gso-Chr12 36755955 36757440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1414 6 317 Receptor kinase-like Gene Family AT3G59420 38.650 7.91e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso12g1414 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1414 - - gmx:100305389 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1414 12 36755955 36757440 Gso12g1414 12 36755955 36757440 ECH