Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1412 ATGGAACTATCAGATTTGCAAAACAAGAAGCAGAGCAGCAGCAGCAGCAGCACAGGTGCTACTCATCAACAACAACAACAACAACAACAATCCTCTTCTACCCATCTTGTTGTGCCTTCCCCTTCCAATTCTTCCGCATCCCTCATCGACGCCTCCTTAGCCATCGCCACCAGATCTGATGATTCGACCAAGAAGACCCAACAACCCTCCACCAACACCAAGCGATCCACCAAGGACAGGCACACCAAAGTCGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCCGCTAGGGTTTTCCAGTTGACAAGAGAATTGGGCCACAAGTCCGACGGCGAAACTATCGAATGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGAACCGGAACCATCCCCGCCAATTTCTCCACCCTCAACGTCTCCTTACGCAGCAGCGGCTCCACGCTCTCGGCGCCGCCCTCCAAATCAGCCCCGCACACCTTTCATGGCGCCCTCGCACTCGCTCACCACCCTTACGACGAAGCCTTTCAACACCCCGCTCTTCTTGGCTTCCACCCTCACCATCACCAGCAGCAGCTTCTCTCCGCCGATCAAATCGCAGAAGCGCTTCCCAGCGCTGGCGGCGGTGACTCCGGCGGCAACTACCTTAGAAAGCGCTACCGAGAAGATCTCTTCAAAGACGATAACATCAACAATACCCAATCTCAGAACGATAGCGGTGATGCTGATGGTGATGCTGATGGTGATGGGTCTTCGCCTAAGTTACCCAAGGAAGCTGGGTCTGGGCTTCTTCGGCCCACCAATTTGCTTCCCGCAACAGCGATGTGGGCTAGTGGACCCCCTGGAAGCACAATTTGGATGCTTCCCGTAACCGCCGCGGCGGCTTCTTCTTCTTCTTCATCTTCTTCTGCTTCGTCTGCGGCAAGTTCGGAGAGTCAGATGTGGGCGTTTCCTCAGAGTGTGAGTGGTTTCATGCCGAGGTTCAACCTTCCGGTTCCGGGTGCGCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTTCAATTGGGCCCCTCCATGTTAATGCCGCCGCCGCCGCTGCCGCCGCAACAGCAACAGCAGCCCTCTCAGCATCTGGGCCTTGCCATGTCCGACTCCAACTTGGGCATGTTGGCAGCCCTTAATGCTTACACTAGGGCTGGTTTGAATATTAATTCAGACCATCATCATCATCATCATCATCATCATCATCAATCTCAACCTAGTGAGAGTGGAGAAGATGCTCCTAATAGCTCCCAATGA 1296 0.5556 MELSDLQNKKQSSSSSSTGATHQQQQQQQQSSSTHLVVPSPSNSSASLIDASLAIATRSDDSTKKTQQPSTNTKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYDEAFQHPALLGFHPHHHQQQLLSADQIAEALPSAGGGDSGGNYLRKRYREDLFKDDNINNTQSQNDSGDADGDADGDGSSPKLPKEAGSGLLRPTNLLPATAMWASGPPGSTIWMLPVTAAAASSSSSSSSASSAASSESQMWAFPQSVSGFMPRFNLPVPGALEFQGARAGSLQLGPSMLMPPPPLPPQQQQQPSQHLGLAMSDSNLGMLAALNAYTRAGLNINSDHHHHHHHHHHQSQPSESGEDAPNSSQ* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1412 431 MobiDBLite consensus disorder prediction 74 90 - -
Gso12g1412 431 Pfam TCP family transcription factor 76 188 IPR017887 -
Gso12g1412 431 MobiDBLite consensus disorder prediction 1 73 - -
Gso12g1412 431 MobiDBLite consensus disorder prediction 1 90 - -
Gso12g1412 431 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 431 IPR005333 GO:0003700
Gso12g1412 431 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Gso12g1412 431 MobiDBLite consensus disorder prediction 403 431 - -
Gso12g1412 431 MobiDBLite consensus disorder prediction 232 270 - -
Gso12g1412 431 MobiDBLite consensus disorder prediction 353 376 - -
Gso12g1412 431 PANTHER TRANSCRIPTION FACTOR TCP8 15 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1412 Gso-Chr12 36648996 36651731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1412 1 431 TCP Transcription Factor Family AT1G58100 38.462 1.83e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso12g1412 TCP 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1412 - - gmx:100814151 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1412 12 36648996 36651731 Gso12g1412 12 36648996 36651731 ECH