Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1391 ATGTCTAATATAAACATCAATCATCCACTACCAATAGATGAGGTGGTGACCTACAAGGAGTGTTTGCATAACCATTCAGCAGCACTTGGTCATGTCACCTATGATGGTTGTGTCAAATATATCGCCGGTGAGGATGCTCTCTTGTGTGCTTGTTGTGGCTGCCACCGAAACTTTCACCACAAGAACACCATTTTTACCGCTGAGCCCCAAACTCAAACACCGGATCAAGTGCAAGAGATGAGGTCCAAGAGGAAAAAGAGGACTACCTTCTCGTCAGAGCATAAGAACAAGCTGATTAGGTTTGCTGAGAGTGTGGGGTGGAAACCTCGAAAGGAAAAGAAGGACGAAATTGAAAGCTTCTGCTCTGAGATGGGAATCACCCGTAGGATGTTCATTGTATGGCTCATCAACAACCGTCACCGGGCAATCAATAATGCTTAG 441 0.4535 MSNININHPLPIDEVVTYKECLHNHSAALGHVTYDGCVKYIAGEDALLCACCGCHRNFHHKNTIFTAEPQTQTPDQVQEMRSKRKKRTTFSSEHKNKLIRFAESVGWKPRKEKKDEIESFCSEMGITRRMFIVWLINNRHRAINNA* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1391 146 Pfam ZF-HD protein dimerisation region 16 63 IPR006456 -
Gso12g1391 146 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 83 139 IPR006455 -
Gso12g1391 146 ProSiteProfiles 'Homeobox' domain profile. 81 145 IPR001356 GO:0003677
Gso12g1391 146 Gene3D - 67 144 - -
Gso12g1391 146 SUPERFAMILY Homeodomain-like 74 141 IPR009057 -
Gso12g1391 146 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 13 141 - -
Gso12g1391 146 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 141 - -
Gso12g1391 146 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 62 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1391 Gso-Chr12 36346197 36346637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1391 16 139 ZF-HD Transcription Factor Family AT4G24660 31.138 2.94e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso12g1391 ZF-HD_dimer 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1391 - - gmx:102665135 312.383