Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1384 ATGGGTTGTATATGCTCCAAAGGAAAATCTGCAGACCAATATGTTGCTGAAAACCATGCCAAAGATAGATCCTCCAACACCAAGCATTTGAGATTGGGGGGAAGAGAACTAACAGAGAATGATGCTACGGCTCACCTCATATCCAATGCAAATGCAATTGGACATGGAAATGGAACAGAAGAAGCCTCCACCTCCTCGGATGAACATCATCAAGGGGACAAGAATGTCAATGCCAATGCAACCGAACAATCACCACAACCTAAGGTGTGTAGGATATTTAGTGTAACTGGAGGGGAAAGAGGAGGACAGGTTCTTACTGGCTGGCCCTCTTGGCTCACTGCAGTTGCTGGTGAAGCCATTAGTGGTTGGATACCTCGCAGGGCTGATTCCTTTGAGAAGTTGGATAAGATTGGCCAAGGAACTTACAGCAGTGTTTATAGAGCTCGTGATCTCGAAACAAATAAAATTGTTGCACTCAAGAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTCCGTTTTATGTCAAGGGAAATCATTGTGCTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGTTTTCTGGTAGCTTGTACCTTATTTTTGAATATATGGACCATGATCTTGCAGGCCTTGCAGCAATACCCAACATCAAGTTTACTGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAGTAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCAGCTTTGTTTCAGCCATCTCATGGGCAGCCTTTAACTAGTCGTGTCGTAACCTTGTGGTACCGACCACCTGAACTTTTGCTTGGAGCTACAGATTATGGAGTTACTGTGGATTTGTGGAGTGCTGGATGTATTCTGGCAGAGTTGTTTGTTGGGAAGCCTATAATGCCTGGACGAACAGAGGTGGAGCAACTACATAAAATCTTCAAACTTTGTGGATCTCCATCTGAAGAATACTGGAAGAAGTCAAAGCCACCACATGCAACAGTTTTTAAACCTCAACAACCTTACAAATGTGTTATTTCTCAGACATTCAAGGATATTCCATCATCTGCACTGAGCCTATTGGAGGTCCTTCTTTCTGTAGAACCGAAAGATCGAGGAACTGCTTCTTTAGCCCTTCAGCATGAGTTCTTCACAGCAATGCCACTTCCTTGTGATCCATCAACGTTACCAAAGTACCCACCAAGTAAGGAGTTTGATGCCAAACTTCGCGAAGAGGAAACTAGAAGACAAAGAGCAGTAAATAAAGGATATGAACATGAATCAGTTGGGAGAAATTTTAGAGAGTCCAAAGCTGTGCCAATACCTGATGCTAATGCTGAGTTTCAGGCAACTGTGGGGAGACAAGGACAGTGTAATTCTAAGTGCATTACTAAGAAGTACAATCCTGAAGAGGATGGTGATTACGGCTTCCACCGCGAACCTGCAAAGTCAAGAGCACTCGATGTATTATCTCATTCTGGCCAGTCAGTGCATCCAAGTGTATATGGATCCTCACGCAATATGAATCTGAAAGAGGAAGATCTCACTAGCCCAGATCATGGCTTTAGATCAAGAAAGTCTGAGTTGAGAAAACAAAAATCCTATTGGCAAGGTAGCACTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAGTTCAAGGTGATCCACTGCTTGATATGAGTGGTGACTCTAGTGCGAATTCGCAGTGGCCAGAAGATCAGTTTGGCATGAGATGTAGCCATCAGGCTGATGGTGATTCCAAACAATTGTTGGATGGACTCAAATCTTCACAGAAGAATGACTTTCATCCTATTGGGAAGGATCGTGCTAAGGGCTATGCTAACAAAAATGCCCGCATGCACCATTCTGGACCTTTGCTGGCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAACATGAAAGGCAAATCCAACAGGCTGTCCGCAAAGCTCGTTTAGGTAAGGACAAGACAAAAAAGGCTGACAGTGAGAGTGGCCTAACTGAATCACTATTTCACCATGTGAGAAATCAATAG 2130 0.4347 MGCICSKGKSADQYVAENHAKDRSSNTKHLRLGGRELTENDATAHLISNANAIGHGNGTEEASTSSDEHHQGDKNVNANATEQSPQPKVCRIFSVTGGERGGQVLTGWPSWLTAVAGEAISGWIPRRADSFEKLDKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMSREIIVLRRLDHPNVMKLEGMITSRFSGSLYLIFEYMDHDLAGLAAIPNIKFTEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDSNGNLKIGDFGLAALFQPSHGQPLTSRVVTLWYRPPELLLGATDYGVTVDLWSAGCILAELFVGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKPPHATVFKPQQPYKCVISQTFKDIPSSALSLLEVLLSVEPKDRGTASLALQHEFFTAMPLPCDPSTLPKYPPSKEFDAKLREEETRRQRAVNKGYEHESVGRNFRESKAVPIPDANAEFQATVGRQGQCNSKCITKKYNPEEDGDYGFHREPAKSRALDVLSHSGQSVHPSVYGSSRNMNLKEEDLTSPDHGFRSRKSELRKQKSYWQGSTAKLSRFSNSVAVQGDPLLDMSGDSSANSQWPEDQFGMRCSHQADGDSKQLLDGLKSSQKNDFHPIGKDRAKGYANKNARMHHSGPLLAPEDNLEEMLKEHERQIQQAVRKARLGKDKTKKADSESGLTESLFHHVRNQ* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1384 709 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1384 709 MobiDBLite consensus disorder prediction 543 563 - -
Gso12g1384 709 MobiDBLite consensus disorder prediction 669 709 - -
Gso12g1384 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Gso12g1384 709 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Gso12g1384 709 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1384 709 PANTHER KINASE CDK9, PUTATIVE-RELATED 75 686 - -
Gso12g1384 709 CDD STKc_CDK9_like 131 415 - -
Gso12g1384 709 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Gso12g1384 709 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1384 709 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Gso12g1384 709 PANTHER CELL DIVISION PROTEIN KINASE 75 686 - -
Gso12g1384 709 Gene3D Transferase(Phosphotransferase) domain 1 214 455 - -
Gso12g1384 709 MobiDBLite consensus disorder prediction 52 85 - -
Gso12g1384 709 MobiDBLite consensus disorder prediction 543 565 - -
Gso12g1384 709 Coils Coil 661 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1384 Gso-Chr12 36296099 36301578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1384 123 453 Core Cell Cycle Gene Families AT5G10270 49.422 3.38e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso12g1384 Pkinase 4.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1384 - - gmx:100805055 1429.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1384 12 36296099 36301578 Gso12g1384 12 36296099 36301578 ECH