Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1377 ATGGCTTCCGCTGCGCCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCTCAAGGTCATATGGAACAGCTTGAGGCATCCATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATTTTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACAAGCCCTGATGATCCCCTGCCTGAATCTCCAAGGTGTACAGTCCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTTTGCCACCACTGGATATGACTCAGCAGCCCCCATGGCAAGAATTAGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATATCCAGTCACAGTATGCATCTGGGTGTTCTGGCTACTGCATCTCACGCCATTGCCACAGGAACATTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAATACCTTGAAGCTCGAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGAACGATTGTGGGTGTTGGAGATAACAAATCGTCAGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCGTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTACAAACCCCCAGCCATCCCAAAGAAACAAGAGATCGCGGCCTCCCATTCTACCTTCAACAATGCCTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGAATCTGCACCATTCTCTTATTGTGACCATCAACATGGGCGAGATGTCTATCCATCAACCAATTTCAATTCCACTGCAACTGGTTTTCTTGGTTTTGGTGGGAACTGCTATGCTTCCAACAAGTCAATATATTGGTCCAGTAGGATGGAAAACTCCACAGAATCTTTTTCTCCTGTAGCACTTAAAGAATTTGGAGAGAAGAGACAAGGGACTGCAAATGGCTGTAGACTCTTTGGGATTCAGTTACATGACAATTCTAATTCTAATGAAGAAAGTCTACCAATGGTCACTTTGTCAGGAAGGATGGGTGATGATGGCCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATCCCTTCGGTAAGCTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAGAGCAGGCAAATAAGAAGTTGCACAAAGGTCCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAGATGTTTGACATCACTGGTGAGCTCTGCGGATCGACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCATTGTGAGGAAAATTTTCATCTACACTGCAGAGGAGGTGAGGAAGCTTTCACCCAAAATAGGACTTCCAATCAGTGAAGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGCCAATCCTGAGGATCAGTCATCTATTGTGGGGCCTGGTTGCTAA 1998 0.4459 MASAAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNPQPSQRNKRSRPPILPSTMPDSSLQGVWKSPVESAPFSYCDHQHGRDVYPSTNFNSTATGFLGFGGNCYASNKSIYWSSRMENSTESFSPVALKEFGEKRQGTANGCRLFGIQLHDNSNSNEESLPMVTLSGRMGDDGPLPSLDAESDQHSEPSNVNRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDITGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVRKLSPKIGLPISEEVKPSKMDSEAVANPEDQSSIVGPGC* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1377 665 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso12g1377 665 ProSiteProfiles PB1 domain profile. 541 633 IPR000270 GO:0005515
Gso12g1377 665 SUPERFAMILY CAD & PB1 domains 543 618 - -
Gso12g1377 665 Gene3D - 536 630 - -
Gso12g1377 665 Gene3D - 115 220 IPR015300 -
Gso12g1377 665 SMART B3_2 118 220 IPR003340 GO:0003677
Gso12g1377 665 MobiDBLite consensus disorder prediction 356 383 - -
Gso12g1377 665 MobiDBLite consensus disorder prediction 503 518 - -
Gso12g1377 665 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Gso12g1377 665 MobiDBLite consensus disorder prediction 643 665 - -
Gso12g1377 665 MobiDBLite consensus disorder prediction 474 518 - -
Gso12g1377 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 644 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso12g1377 665 SUPERFAMILY DNA-binding pseudobarrel domain 109 247 IPR015300 -
Gso12g1377 665 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Gso12g1377 665 PANTHER AUXIN RESPONSE FACTOR 9 5 644 - -
Gso12g1377 665 Pfam AUX/IAA family 538 631 IPR033389 -
Gso12g1377 665 MobiDBLite consensus disorder prediction 346 383 - -
Gso12g1377 665 Gene3D - 281 353 - -
Gso12g1377 665 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1377 Gso-Chr12 36216540 36223091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1377 7 659 B3 DNA Binding Superfamily AT1G59750 71.689 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso12g1377 AUX_IAA 9.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1377 K14486 - gmx:100793224 1362.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1377 12 36216540 36223091 Gso12g1377 12 36216540 36223091 ECH