Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1351 ATGTCACATTCCAGGAAACCCGTGTCGTCCGAGTTAGGGCTCACCGAGCGGTTCCGCGACTCACTGAGTTGCTCCGACGACAACACCAACAAGCCCGATTTCCGAGAACTCGATTTGGGTTCACCGGTTTCCACATTGCGGCCACGTCACTACCACAGTGCACCCACTACAACGAGTAGCACTAGTACGAGCACTAGCAGCGGGTCGACCGGGTCGGGTTCGGGTCGAAGCGGAAACAATAACGCGGTTTCCAAGAGATCCCATTCCGGCGAGTTGTCTGGGTCGAGCGAGACCAATAGTCCGACCCGTGTTTCCAAACCGGGTCACCGGAGATCCAATTCGGGTCAGAGCCAGAGATCTCCGTCGTCTTCCTCCTCCTCCGCCGCGGTGAATTCACCGCCTCTGAGCGTTCTCCCGGCCGGGAACATCTGCCCGTCCGGGAGGGTTCTCAAGGCGGCGACCGCAGCGGTGGCGCCCAGCCGGAGCTCCCGGTCGGATGTTCTGGGATCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGAGGTGGAAAAGGTGGTGGTGGTGGGGATGTGAGGATCGCCGGAGATTCAGCGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGAAATGCGGAGTATAAGAGAGGGCACTTTGCTGAGGCGTTGTGTTTGTATGATCGGGCAATTGCGATGTCGCCGGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGGTTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGTGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGCTGTTTCTCAGGTTAGGACAGGTTGAGGACTCTAGGAAGCGCCTTTGTTATCCTGGGCTGCAGCCAGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGTGATGTGCGGAGGATACGAGATTGGAAAAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCAACACCAGATGGATGATGCTGAATCATGTTTATCACAGATTCCCAAAAGCGAGCCACGACCTGGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCCGAGGCTTATTGCTTCTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTTGCTAGAGCTCGACTGCGTGGTAATGATCTTTTTAAGTCAGAAAGGTTCACTGAGGCCTGCTCGGCATACGGGGAAGGTTTGAGGCTCGACCCTTCAAACTCTGTCCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTATGCATCCTACCAAATTATACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGCTAGAACGGTGGGAAGAAGCAGTAACAGATTATGAACTTTTGCGGAGAGAACTACCAGACGACAATGAAGTTGCTGAAAATCTGTTTCATGCACAAGTAGCATTAAAGAAATCTCGTGGGGAAGAAGTACATAATTTAAAATTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCTTTTTGAAACTGCATCAAACATGCAATGTAAGCAGATATCGCCATTCATGAATACACTATGTAGTCGTCATCCATCTATTAACTTCCTTAAGGTGGATATTCAAACAAGCCCCGCAGTCGCCGCTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2031 0.5076 MSHSRKPVSSELGLTERFRDSLSCSDDNTNKPDFRELDLGSPVSTLRPRHYHSAPTTTSSTSTSTSSGSTGSGSGRSGNNNAVSKRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSQRSPSSSSSSAAVNSPPLSVLPAGNICPSGRVLKAATAAVAPSRSSRSDVLGSGTGNYGHGSIMRGGKGGGGGDVRIAGDSAKRVDPEEVKRMGNAEYKRGHFAEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVVLDPNYGRAHQRLAMLFLRLGQVEDSRKRLCYPGLQPDPAELQKLQIVEKHINKCGDVRRIRDWKSVLREVDAAVAAGADSCVQLFMCRAEALLKQHQMDDAESCLSQIPKSEPRPGSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALCILPNYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVLFETASNMQCKQISPFMNTLCSRHPSINFLKVDIQTSPAVAAAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1351 676 ProSiteProfiles TPR repeat profile. 204 237 IPR019734 GO:0005515
Gso12g1351 676 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 12 674 - -
Gso12g1351 676 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 12 674 IPR044534 -
Gso12g1351 676 Pfam Thioredoxin 584 668 IPR013766 -
Gso12g1351 676 MobiDBLite consensus disorder prediction 20 34 - -
Gso12g1351 676 Pfam Tetratricopeptide repeat 400 429 IPR019734 GO:0005515
Gso12g1351 676 SUPERFAMILY Thioredoxin-like 479 674 IPR036249 -
Gso12g1351 676 Pfam Tetratricopeptide repeat 478 509 IPR001440 GO:0005515
Gso12g1351 676 MobiDBLite consensus disorder prediction 155 201 - -
Gso12g1351 676 CDD TRX_family 581 662 - -
Gso12g1351 676 Pfam Tetratricopeptide repeat 210 270 - -
Gso12g1351 676 Gene3D Glutaredoxin 569 675 - -
Gso12g1351 676 SMART tpr_5 204 237 IPR019734 GO:0005515
Gso12g1351 676 SMART tpr_5 396 429 IPR019734 GO:0005515
Gso12g1351 676 SMART tpr_5 510 543 IPR019734 GO:0005515
Gso12g1351 676 SMART tpr_5 442 475 IPR019734 GO:0005515
Gso12g1351 676 SMART tpr_5 476 509 IPR019734 GO:0005515
Gso12g1351 676 SMART tpr_5 348 381 IPR019734 GO:0005515
Gso12g1351 676 SMART tpr_5 238 271 IPR019734 GO:0005515
Gso12g1351 676 MobiDBLite consensus disorder prediction 158 172 - -
Gso12g1351 676 MobiDBLite consensus disorder prediction 1 135 - -
Gso12g1351 676 MobiDBLite consensus disorder prediction 50 133 - -
Gso12g1351 676 Gene3D Tetratricopeptide repeat domain 202 562 IPR011990 GO:0005515
Gso12g1351 676 SUPERFAMILY TPR-like 204 432 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1351 Gso-Chr12 33559780 33563933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1351 441 586 U-box Gene Family AT3G07370 28.415 1.49e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1351 - - gmx:100805790 1246.49