Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1339 ATGGATAGCTACTACCATCAACACCACAACCCTCACTTTGACAACAACAATGAACCACATTTACCTCCTGGCTTCAGATTCCACCCCACAGATGAAGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGATAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAGCCATGGGAACTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGGTTACGCACAAATAGAGCCACTGAAGCTGGTTATTGGAAAGCCACTGGAAAAGACAGAGAGATTTACAGCTCCAAAACTTGCTCACTCGTTGGCATGAAGAAAACCTTGGTTTTCTATAGAGGAAGGGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCACGAGTATCGCTTAGAAGGCAAATTCGCTTACCACTATCTCTCTAGGAGCTCCAAGGAAGAGTGGGTGATCTCACGTGTGTTTCAGAAGAACACCACCGGCGGTGGCTCCACCGTGTCATCCGCCTCCGCCGCCACCACCGGTGGTAGTTCTAAGAAAACAAGAATGACCACATCAAACAATAGCAGCAACATGAGCCTCTGCCCCGAACCGGGTTCACCCTCTTCCATATACCTTCCGCCGCTTCTAGAATCTTCTCCTTACGCCGCGGCTGCGGCAACATTCAACGACCGCGAAAGATGCTCCTTCGACAGCGCCGCCAACAACAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATCTCCGGCGCCGCCTTCGACCACCTCGTTCCGTCGCCGGAGCCTCCGCTCGACCCTTCCGCTCGCTTTCATCGTAACAACAACAACAACGTCGGTGTCGGAATCTCCACCTTCCCGTGCCTCAGATCCTTGCACGACAACCTTAACCTTCCCTTCTTTTTCTCTCCAACGGGCCACATCAGCAGTGCTGAAGTGGCATCATTTGGTGCCGTTGGCAACTGGACGGCGGCACCGGAAGAGCACAGGATGGCTGACAGTGGCTCCGGCATGACGATTGTACCGTCCGAGTTGGATTGCATGTGGGACTATTGA 1101 0.5232 MDSYYHQHHNPHFDNNNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKEEWVISRVFQKNTTGGGSTVSSASAATTGGSSKKTRMTTSNNSSNMSLCPEPGSPSSIYLPPLLESSPYAAAAATFNDRERCSFDSAANNNQREHVSCFSTISGAAFDHLVPSPEPPLDPSARFHRNNNNNVGVGISTFPCLRSLHDNLNLPFFFSPTGHISSAEVASFGAVGNWTAAPEEHRMADSGSGMTIVPSELDCMWDY* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1339 366 Gene3D NAC domain 30 177 IPR036093 GO:0003677|GO:0006355
Gso12g1339 366 ProSiteProfiles NAC domain profile. 21 173 IPR003441 GO:0003677|GO:0006355
Gso12g1339 366 MobiDBLite consensus disorder prediction 176 214 - -
Gso12g1339 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 13 348 - -
Gso12g1339 366 MobiDBLite consensus disorder prediction 1 15 - -
Gso12g1339 366 SUPERFAMILY NAC domain 16 173 IPR036093 GO:0003677|GO:0006355
Gso12g1339 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 348 - -
Gso12g1339 366 MobiDBLite consensus disorder prediction 1 23 - -
Gso12g1339 366 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1339 Gso-Chr12 32493330 32496069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1339 4 366 NAC Transcription Factor Family AT5G53950 49.874 8.06e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g1339 NAM 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1339 - - gmx:100778689 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1339 12 32493330 32496069 Gso6g1986 6 34905481 34908104 GST