Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1335 ATGGCTCCGAGGGATATCAATAGATCTAACGTTGTTGTTGCCGGAGGATCCAACCCGACCCGTAAAGAGATCCGATACCGCGGCGTGAGGAAGCGGCCGTGGGGCCGCTACGCCGCCGAGATCCGCGATCCCGGCAAGAAGACGCGCGTCTGGCTAGGAACGTTCGACACCGCGGAGGAGGCGGCGCGTGCGTACGATGCGGCGGCGCGTGAGTTCCGCGGCGCAAAGGCTAAGACCAATTTCCCCACCCACGCGGAGCTGACGCACGCGGCGGCGCGTAGCCCCAGCCAGAGCAGCACGTTGGATTCGTCCTCTCCCCCGACGCCGCCGTTGGACCTCACTCTTGCCGCCCCACTCGCCGCCGGTGGCGCGTTGGTGTTCCCAGTGGCGCGGCCCGTGGTCTTCTTCGACGCGTTCGAGCGTGCCGAGGTGCGCGCGTCGTTCGATCTTCCCGTGGCGGCGTTCAGCGACTCGGACTCGTCCACGGTCATGGATTACGAGCGGGGCTCACGTCGGAGAGTGTTGGATCTTGACCTTAATGTCCCTCCTCCGCCCGAGGTTGCCTGA 567 0.6596 MAPRDINRSNVVVAGGSNPTRKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTHAELTHAAARSPSQSSTLDSSSPPTPPLDLTLAAPLAAGGALVFPVARPVVFFDAFERAEVRASFDLPVAAFSDSDSSTVMDYERGSRRRVLDLDLNVPPPPEVA* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1335 188 MobiDBLite consensus disorder prediction 88 109 - -
Gso12g1335 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 18 179 - -
Gso12g1335 188 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Gso12g1335 188 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Gso12g1335 188 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Gso12g1335 188 MobiDBLite consensus disorder prediction 90 109 - -
Gso12g1335 188 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Gso12g1335 188 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Gso12g1335 188 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Gso12g1335 188 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
Gso12g1335 188 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 179 - -
Gso12g1335 188 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1335 Gso-Chr12 31907847 31909056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1335 22 137 AP2-EREBP Transcription Factor Family AT3G15210 66.165 1.71e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso12g1335 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1335 K09286 - gmx:100785455 308.916