Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1325 ATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAATCGTAAATCCTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATAACGGACAATCTTGATTGTTCAGCGGATGATTTGACGGATATTGAGAAAGAAGAAATTGGTCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATAAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGCGACGAGGAAGCTGAATCTGTTGGTGAAGTTCAGCAAGATGAAGATGACCATCATGCTACAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGAGACTGATTCTTTATTTCAACCTTTAGCACACTTATTTCCACCTGTATACAGAATTTGTGCTGGCTGTAATGCTGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCGTCATCCAAGATGTGATGTTTGCAAGAACTTTATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGTCAGTGGATACCAAATATCTGTTGCTTGACGATGGTCGAAAGCTGTGCCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTCGAAATACAAGAGTTTTATGAGGGTTTACATATGAAGATGGAGCAGCAAGTTCTGATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCATCACTTACCTGAAACCAGAGGACTTTGCTTGTCCGAAGAGCAAAATGTTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTATCCTTCTGATATCATCTATTTTCAAAATCTATAG 1224 0.415 MGWFTKLLKGSNRKSSGGRYHGKYEDDRITDNLDCSADDLTDIEKEEIGRAIALSLSEADKKGKKVIEDDSESEDDELCPLSDEEAESVGEVQQDEDDHHATIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSETDSLFQPLAHLFPPVYRICAGCNAEISHGRFLSCMGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELRHPRCDVCKNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRLESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKMEQQVLMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQNVPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRYPSDIIYFQNL* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1325 407 Pfam Protein DA1 307 397 IPR022087 -
Gso12g1325 407 PANTHER PROTEIN DA1-RELATED 2 1 397 IPR045218 -
Gso12g1325 407 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Gso12g1325 407 MobiDBLite consensus disorder prediction 70 92 - -
Gso12g1325 407 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 397 - -
Gso12g1325 407 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Gso12g1325 407 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Gso12g1325 407 CDD LIM_DA1 158 210 - -
Gso12g1325 407 SMART lim_4 157 209 IPR001781 -
Gso12g1325 407 Pfam LIM domain 158 212 IPR001781 -
Gso12g1325 407 Gene3D Cysteine Rich Protein 154 215 - -
Gso12g1325 407 MobiDBLite consensus disorder prediction 59 100 - -
Gso12g1325 407 SMART uim 43 62 IPR003903 -
Gso12g1325 407 SMART uim 117 136 IPR003903 -
Gso12g1325 407 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Gso12g1325 407 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1325 Gso-Chr12 31475084 31479618 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso12g1325 DA1-like 6.6e-38 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1325 - - gmx:100792521 828.935