Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1315 ATGGGAGAACCACAACACCCTCACCAGCACCATCAACAAGCAGCAGCAACACCGTCGAGAGCGGCGATGAGAGGCGGCGGCGGCGGCGAGATTGTGGAGGTGCAAGGCGGCCACATTGTCCGCTCCACCGGACGGAAGGACCGCCACAGCAAGGTCTGCACTGCCAAAGGCCCCCGAGACCGCCGCGTGCGCCTGGCGGCGCACACCGCCATCCAGTTCTACGACGTCCAGGACCGCCTTGGCTACGACCGTCCCAGCAAGGCGGTCGACTGGCTCATCAAGAAAGCCAAGGCAGCCATCGACCAACTCGCGGAGCTCCCGCCATGGAACCCCACCGCCACGCCAATGCAACCGCCTTCCCAAGAAATTGTCCACCGCGAAAACAAATCTCTCGGGATGGACGATTCATTGACAGCCTTCAGTTGCCGCGGCGAGAGCCCCGCTTTCGCCGCGGCTACTAGAGATTCAGAACAATTCTCTCACCCACAAGTAGAGCAGAATGAAAATGCTAACAACATCAGCAGCAGCAGCATCAGCATCAAATACAATAGCGGTTCTGGTTTTCTGCCGGCGTCCTTGGACACTGACAATATTGCGGAGACAATCAAGACTTTCTTTCCAGTGGAGGCGACTACGACGTCGTTTCAGAGTTACCCGCCGGCGCCACCGGATTTGGGGCAGCAAGATCTACGGCTCTCGCTACAGTCCTTTCAGGACCCTATTATGCTTCATCACCAGCCTCAGAGTCACCACGAGCCGGTGCTCTTTGCCGGAACCGCCGCCGCGGCGCTCGGCTTCGACGGCGGTTCCGGGTGGTCAGAACACCAGCACCAGAACCATCACTCGGAGGAACAGCGATTGCTCTATGCTGGTGGCAACAGTGGCCATGGCGGTGGGTTTGTGTTCAACACGCCGGCGCCGGTGCCGGCGTTTGGCCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGATTCGTGCTTGGATAGACCCTTCGGTCGATCACCACCACCATCATCATCACTACCTCTCGCAGTTGATCCACCAGGGTTCCGTCGCCGGAGGCAGCGGATTCTCCAGTGGATTCTCCGGCTTCCGCATTCCAGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTATCGGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1194 0.5896 MGEPQHPHQHHQQAAATPSRAAMRGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELPPWNPTATPMQPPSQEIVHRENKSLGMDDSLTAFSCRGESPAFAAATRDSEQFSHPQVEQNENANNISSSSISIKYNSGSGFLPASLDTDNIAETIKTFFPVEATTTSFQSYPPAPPDLGQQDLRLSLQSFQDPIMLHHQPQSHHEPVLFAGTAAAALGFDGGSGWSEHQHQNHHSEEQRLLYAGGNSGHGGGFVFNTPAPVPAFGQFFSQRGPLQSSNTPSIRAWIDPSVDHHHHHHHYLSQLIHQGSVAGGSGFSSGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1315 397 MobiDBLite consensus disorder prediction 1 58 - -
Gso12g1315 397 MobiDBLite consensus disorder prediction 156 171 - -
Gso12g1315 397 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 397 IPR005333 GO:0003700
Gso12g1315 397 MobiDBLite consensus disorder prediction 40 58 - -
Gso12g1315 397 MobiDBLite consensus disorder prediction 374 397 - -
Gso12g1315 397 MobiDBLite consensus disorder prediction 152 171 - -
Gso12g1315 397 ProSiteProfiles TCP domain profile. 45 103 IPR017887 -
Gso12g1315 397 Pfam TCP family transcription factor 44 170 IPR017887 -
Gso12g1315 397 PANTHER TRANSCRIPTION FACTOR TCP4 9 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1315 Gso-Chr12 30001330 30004150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1315 9 397 TCP Transcription Factor Family AT1G53230 48.786 3.79e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso12g1315 TCP 6.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1315 - - gmx:100800275 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1315 12 30001330 30004150 Gso6g1955 6 33345227 33346964 ECH
Gso12g1315 12 30001330 30004150 Gso12g1315 12 30001330 30004150 ECH