Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1311 ATGGATCAAATGAGTCAACAAAGGCATGGCTATTTTCATTCAGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCAACCTAATGTATGCACACTCGTGACAGCCTCAGGGAACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGGTGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCGGCCAACTTATATTATTCTAGCATGAATCCTTCATCTGGTGCGGCTGTATCTCTAAATGCTGAAGTTATGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTTCAGTTGCTCCCCCTAATGCAAGACACACTGAAAATGGCATCCCCTCGCTACCACATTGCACTTCATGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCGAGTAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCTAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGCCCCCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCCCATCCTCCCCTTGTCAACCCACACTACCATAGCTTTCATCATCAAACACAGCCTGTCCAAGAGATGAGAGGTCACTCCATCAACTTTCACCCTCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATCCATCACGCAGTTCTTCAATCTTCATACAAGATTCTATTGAGATGGGTGCTAGGCATGTTGGTGCTGCACCATTTGCAGGTTCACATATATACCGACCCCATAGAGGCAGCACACATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACTTTTCTCCAAGTTGATGATGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAAACTTATTTATTACTACCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGAAAATGATTCTTGCATAATATGCCAGGATGAATATAAAAGCCAAGAAAAGATTGGAATTCTTCAATGTGGGCACGAATATCACGCAGATTGTTTAAAGAAATGGTTACTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAA 1377 0.4234 MDQMSQQRHGYFHSESIHFRGSNISQPNVCTLVTASGNGTNLDSHYLLDAYDNGMVYGMTQYNGVQHQHNLDMGVPAAANLYYSSMNPSSGAAVSLNAEVMRGNYQYFNASASSSVAPPNARHTENGIPSLPHCTSWSRSGESMMVRDPNRITRVNYLSQHFQPAAPPPWLDQQLNSNNNDGHALPWHQSLLMPYVQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPHYHSFHHQTQPVQEMRGHSINFHPPPPVTAPSYRVPTNPSRSSSIFIQDSIEMGARHVGAAPFAGSHIYRPHRGSTHETTLRHRNLPPVTFLQVDDVTLLVDHHNDMRLDIEDMSYEELLALGERIGKVNTGLSEEMITSQMKTKTYLLLPTNAINLEEAASEEQENDSCIICQDEYKSQEKIGILQCGHEYHADCLKKWLLVKNVCPICKSEALTPGEKCV* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1311 458 ProSiteProfiles Zinc finger RING-type profile. 406 447 IPR001841 -
Gso12g1311 458 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 86 455 IPR045191 GO:0061630
Gso12g1311 458 SMART ring_2 406 446 IPR001841 -
Gso12g1311 458 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 86 455 - -
Gso12g1311 458 Pfam Ring finger domain 404 447 IPR001841 -
Gso12g1311 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 451 IPR013083 -
Gso12g1311 458 SUPERFAMILY RING/U-box 399 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1311 Gso-Chr12 29852170 29859621 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1311 333 451 C3H Transcription Factor Family AT2G15530 50.420 9.53e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1311 K19041 - gmx:100808448 951.814