Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1309 ATGGATCGAATGAGTCAACAAGGGCATTATTTTCACTCTGAAAGTATGCATTTCACAAGCACCAACATCTGTCTGCCTAATATATGCCCAGTGGTTACATCTTCAGGCAACGGAACTATTCTAGATTGCCATTATATACTAGATGCTCATGACAGCTATTTAGGTCGGCACTTTCAACCAGCTGCTCCTCTCTGGCCGGACCAACAGTTGAATAGCTATAATAATGATGGTCATGCTTTGGCTTGGCATCTGTCTCTTCCAATGCCATATGTACAAGCTCTCAGTGCTAATGGAAGCTCATCAGAGAATGCAAGAATTGGTCCACAGAGATATCATGATACAACTGGCAGCAGAAGTGGCCACAGATTTCCCCATCCTCCTCCACAGTACCATAGCTTTCATCAACATGCACAAGAGATCAGAGGTCACTCCTTCTACTTTCATCCTCCTGTAATTGCACCTTTGTATAGAGTTCCAACGAATCCTTCACGCAGTTCTTCAATCCTCATACATGATGCTATTGAGATAGGTGCTAGGCATCCTGGCCATGTACCATTTGTAGGTGCACGTATACACCAGTCTCATAGAGGCAACATGCACGAGGCAACTCTTAGACATCAAAATCATCTTCCTGCGACCTTTTTCCTAGATGATGATGTAGCTTTACTGGTTGACCATCATACTGATATGCGCTTGGACACTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGTGAGCAGATTGGCAACCCAAAATCAGGTTTATCAGAAAATATAATTACAAGTCAAATGAAGACCAAAACTTATTTACGTTCTACTAATGCGACTAACTTGGAGGAGGCAGCTTCTGAGGAGCAGGAAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACCAAGAGAAGATTGGAATTCTTCGATGCGGGCACGAATATCACACAGATTGTTTAAAGAAATGGTTACTTGAGAAAAATGTCTGTCCCATGTGCAAATCCGTAGCATTGACTCCGGGAGAGAAGTGTATATAA 1035 0.4232 MDRMSQQGHYFHSESMHFTSTNICLPNICPVVTSSGNGTILDCHYILDAHDSYLGRHFQPAAPLWPDQQLNSYNNDGHALAWHLSLPMPYVQALSANGSSSENARIGPQRYHDTTGSRSGHRFPHPPPQYHSFHQHAQEIRGHSFYFHPPVIAPLYRVPTNPSRSSSILIHDAIEIGARHPGHVPFVGARIHQSHRGNMHEATLRHQNHLPATFFLDDDVALLVDHHTDMRLDTEDMSYEELLALGEQIGNPKSGLSENIITSQMKTKTYLRSTNATNLEEAASEEQETDLCIICQDEYKNQEKIGILRCGHEYHTDCLKKWLLEKNVCPMCKSVALTPGEKCI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1309 344 MobiDBLite consensus disorder prediction 99 129 - -
Gso12g1309 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 337 IPR013083 -
Gso12g1309 344 MobiDBLite consensus disorder prediction 99 114 - -
Gso12g1309 344 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Gso12g1309 344 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 49 341 - -
Gso12g1309 344 SUPERFAMILY RING/U-box 285 337 - -
Gso12g1309 344 SMART ring_2 292 332 IPR001841 -
Gso12g1309 344 Pfam Ring finger domain 291 333 IPR001841 -
Gso12g1309 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 49 341 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1309 Gso-Chr12 29122023 29125703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1309 191 337 C3H Transcription Factor Family AT2G15530 39.456 1.56e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1309 K19041 - gmx:100808611 629.402