Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1303 ATGGGGGATTTCATCTTCTCCTTCAAGACCCAACCACAAGACCATGCTCACCACCAAAGAGCAAAGCACAACAACAACAACAACAAGAGGCTAACCGAGGACCAGGTCGCGATTCTCGAGAAGTGCTTCGCCTCCAACATGAAGCTCGAGCCGGAGCAGAAGTTCCACCTTGCAAACCAACTTGGTGTGCCTCCAAGACAAGTTGCAATTTGGTATCAAAACAAAAGGGCACGCTGGAAGACCCAGAGCCTCGAGGTGGACCATGGTGTGCTTCAGGCAAGGCTAGAGAATGTAGTGGCTGAAAAGAAGCAGCTAGAGAAAGATGTTGAAAGGCTCAAAGCTGAGCTGAAGAAGGCTCAAGAGATGTTGTTAATCAGCAATAATGTCAAAAGTGGAGACCATAGTAACAATAATAATAATAATGCTTCTTGTGAATTTTCAACTTCTTTTGAAGAAGGAGGGAGTTCTGGGGTGGTGCTTGATGATGCCACTCATCATCATCATCATGAGTGTTGGCAAAGTGGTAGTGAGGTTATGCAGGTTGAGGAGCTCTTTACTTACTTCATGGGTGCAAATTATGGGTCAGGCTTGCATGAGAAAAGGGCATAA 609 0.4581 MGDFIFSFKTQPQDHAHHQRAKHNNNNNKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKAELKKAQEMLLISNNVKSGDHSNNNNNNASCEFSTSFEEGGSSGVVLDDATHHHHHECWQSGSEVMQVEELFTYFMGANYGSGLHEKRA* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1303 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 196 IPR045224 GO:0003700
Gso12g1303 202 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Gso12g1303 202 MobiDBLite consensus disorder prediction 9 29 - -
Gso12g1303 202 CDD homeodomain 30 83 IPR001356 GO:0003677
Gso12g1303 202 Pfam Homeodomain 30 80 IPR001356 GO:0003677
Gso12g1303 202 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Gso12g1303 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 13 196 - -
Gso12g1303 202 Coils Coil 88 129 - -
Gso12g1303 202 SUPERFAMILY Homeodomain-like 15 83 IPR009057 -
Gso12g1303 202 MobiDBLite consensus disorder prediction 13 29 - -
Gso12g1303 202 SMART HOX_1 25 86 IPR001356 GO:0003677
Gso12g1303 202 Gene3D - 15 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1303 Gso-Chr12 29006853 29007757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1303 26 162 Homeobox Transcription Factor Family AT5G53980 48.905 7.56e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso12g1303 Homeodomain 9.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1303 - - gsj:114378167 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1303 12 29006853 29007757 Gso12g1303 12 29006853 29007757 ECH