Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1296 ATGACCAATGCATTTTCTACTCAAAATGTTATTGGGGAAGGAGGGTTTGGGTGTGTTTACAAAGGTTGGCTGCCAGATGGAAAAATAGTTGCAGTAAAGAAGCTTAAGGCTGGTAGTGGACAGGGAGAAAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCATGTTCATCATCGACATTTGGTGGCATTAGTTGGTTATTGCATATGTGAGCAGCAAAGAATTCTTATCTATGAGTATGTTTTCTTCAAAGATCATCACTTGCATGAAAGTGGAATGCCAGTGTTAGATTGGGCCAAGAGGCTAGAGATTGCAATAGGTGCTGCAAAGGGCTTAGCATATCTGCATGAGGATTGCAGCCAAAAGATTATTCACAGAAATATAAAGTCCGCAAACATACTTTTGGATAATGCTTATGAGGCACAGGTTGCTAACTTTGGACTTGCGAGGTTAGCTGATGCTGCCAATACCTATGTATCAACTAGGGTCATGGGAACCTTTGGTTGCAGTGTTCAGATGCTCAGGTTTTTTGGAATAGGTTACGACTCTCCCACTTTTGCCACTGCAATGCACTGA 576 0.4236 MTNAFSTQNVIGEGGFGCVYKGWLPDGKIVAVKKLKAGSGQGEREFKAEVEIISHVHHRHLVALVGYCICEQQRILIYEYVFFKDHHLHESGMPVLDWAKRLEIAIGAAKGLAYLHEDCSQKIIHRNIKSANILLDNAYEAQVANFGLARLADAANTYVSTRVMGTFGCSVQMLRFFGIGYDSPTFATAMH* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1296 191 SUPERFAMILY Protein kinase-like (PK-like) 2 168 IPR011009 -
Gso12g1296 191 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 168 - -
Gso12g1296 191 ProSiteProfiles Protein kinase domain profile. 5 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1296 191 Pfam Protein tyrosine and serine/threonine kinase 7 161 IPR001245 GO:0004672|GO:0006468
Gso12g1296 191 Gene3D Transferase(Phosphotransferase) domain 1 85 184 - -
Gso12g1296 191 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Gso12g1296 191 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 1 168 - -
Gso12g1296 191 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1296 Gso-Chr12 28500233 28508765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1296 1 168 Trihelix Transcription Factor Family AT1G23540 74.118 1.00e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso12g1296 PK_Tyr_Ser-Thr 3.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1296 - - gmx:102663921 390.193