Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1283 ATGGGTGGTGTCTGTTGCAAGCCCTCTGCCATTGAGGATAGCAAGGAGAGTCCAAGGGAGCGTATGTCGACCAAGGCGGCTTCATTGGACTCTCGTGTGTCGAGGGGTGCTTCCTTGAGGCGGGAGGATGCATATAGGGGGAAGGATAGGTATGATGGTAATGATGTGAGGACTGCTTTGATTGATAAGCAAGGGAACGGTTCTGTGCGGTTGCAAGACGAAAATATTGAGAGGAAGAGGGAGAGAATGGAGTGTGTTGTTGCTGCTCAACAACATCCAGGGGCTGGTAGTGTTCCCAAGGCCATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCATCCTGGCTGGCAGCAGTGGCTGGAGAGGCTATTAAGGGATGGTTGCCTCGCCGTGCTGATTCCTTCGAGAAGCTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTATAGGGCTCGTGATCTTGAGCAAAATAAAATTGTTGCTTTGAAAAAAGTCAGGTTTGATAATCTTGAGCCAGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCCTTGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTCGAATACATGGAGCATGATTTGGCTGGGCTTGCATCACATCCTAAACTGAAGTTTACGGAAGCACAGGTAAAATGTTACATGCAGCAACTTCTACAAGGACTTGACCACTGCCACAACTGTGGTGTGCTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGATAACAATGGCATCTTGAAGATTGCAGACTTTGGTTTGGCAAGTGTTTTTGATCCAAATCAAACTCAGCCTTTGACAAGCCGAGTTGTCACTCTTTGGTACCGTCCACCAGAGCTTTTACTTGGTGCCACATACTATGGCACTGCTGTAGATTTATGGAGTACAGGCTGTATACTTGCTGAGTTGTATGCTGGCAAACCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTGCATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCGACAACCCTATTGGCGTTGTGTTGCCGACACATTCAAGGATTTCCCTGCACCTGCTTTAGCACTCATGGAGACTCTTTTGTCCATTGATCCTGCTGATCGTGGAACTGCAGCATCTGCTTTGAAGAGTGATTTCTTCACAACAAAGCCTCTACCTTGTGATCCTTCAAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAACTACGGGACGAACAAGCAAGAAGCAGGCAGGGGGCAACAGGAAGCAGGGGCCAGAGACATGACCTTGAAAGAAGAGGGGCAAGAGAATCTCGAGCTGTTCCTGCACCTGATGCCAATGCTGAACTGCCACTGTCAATGCAGAAGAGACAAAGTCAGGCCCAATCAAAAAGCAGAAGTGAGAAGTTTAATCCTCATCCTGAAGAAGCTTCTGGATTTCCCATTGATCCCCCCAGATCGTCACAAGCTGTAGAAGTAGGTATAGAAACTCAAGTACCACAACATAAAAGAGCCTCCCATTCGGGTCCGCTGGCTCACCGAACTGCATGGGCTAAATCTGGGAAGAACCAGGATGATGCTCCAAAGATTTCAGTTGGGGGCGACCTATCAACAATCTCAGGCTTAGTTGCTGCAAGGAGTATGTTGTCAGATGATCGCAGAGAAAGATCTGGATCGTCACAAACGGAGGCTTCAAAATTAACGAACAGATTCCCAGGATCATTCAAGGACTTCTCTGAATCGTCAATAAAACAAGATCAAAGGCATCATGTACAGGGCCAAGTAGGCACTTCCCAAAAGGAAGAAGGGAGAAGCAGCAACAAAGACCTAGTTCTTGTTGGTTATGGATCAGAGGGTCATAAAATTCATTACTCTGGTCCATTAACATCAAGCAACATGGATCAGGTGTTGAAAGACCATGACCGCCAAATTCAAGAGGCTGTTAGACGGGCACGTTTGGATAAAGCAAAAATTAGGAGGCTCCAAGCTGAAGGGAACCAGCATTATTGCTCCTATCCTTCTTAA 2127 0.4607 MGGVCCKPSAIEDSKESPRERMSTKAASLDSRVSRGASLRREDAYRGKDRYDGNDVRTALIDKQGNGSVRLQDENIERKRERMECVVAAQQHPGAGSVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQNKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPKLKFTEAQVKCYMQQLLQGLDHCHNCGVLHRDIKGSNLLIDNNGILKIADFGLASVFDPNQTQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPRQPYWRCVADTFKDFPAPALALMETLLSIDPADRGTAASALKSDFFTTKPLPCDPSSLPKYPPSKEFDAKLRDEQARSRQGATGSRGQRHDLERRGARESRAVPAPDANAELPLSMQKRQSQAQSKSRSEKFNPHPEEASGFPIDPPRSSQAVEVGIETQVPQHKRASHSGPLAHRTAWAKSGKNQDDAPKISVGGDLSTISGLVAARSMLSDDRRERSGSSQTEASKLTNRFPGSFKDFSESSIKQDQRHHVQGQVGTSQKEEGRSSNKDLVLVGYGSEGHKIHYSGPLTSSNMDQVLKDHDRQIQEAVRRARLDKAKIRRLQAEGNQHYCSYPS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1283 708 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
Gso12g1283 708 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1283 708 MobiDBLite consensus disorder prediction 443 524 - -
Gso12g1283 708 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1283 708 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1283 708 CDD STKc_CDK9_like 134 418 - -
Gso12g1283 708 MobiDBLite consensus disorder prediction 486 501 - -
Gso12g1283 708 Coils Coil 678 698 - -
Gso12g1283 708 MobiDBLite consensus disorder prediction 1 48 - -
Gso12g1283 708 MobiDBLite consensus disorder prediction 582 641 - -
Gso12g1283 708 PANTHER CELL DIVISION PROTEIN KINASE 1 693 - -
Gso12g1283 708 MobiDBLite consensus disorder prediction 595 614 - -
Gso12g1283 708 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Gso12g1283 708 MobiDBLite consensus disorder prediction 12 26 - -
Gso12g1283 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gso12g1283 708 PANTHER CYCLIN-DEPENDENT KINASE 1 693 - -
Gso12g1283 708 MobiDBLite consensus disorder prediction 443 473 - -
Gso12g1283 708 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Gso12g1283 708 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1283 Gso-Chr12 26880118 26890603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1283 126 476 Core Cell Cycle Gene Families AT5G10270 51.771 4.44e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso12g1283 Pkinase 1.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1283 - - gsj:114379228 1403.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1283 12 26880118 26890603 Gso12g1283 12 26880118 26890603 ECH