Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1261 ATGGAAGAGGATGAAGAGACGCAGCAACGAGTCACTGACTCGTCCCTCTCCACCGAGTCACGCACTTCCACTCCTTCTGATGGAGCGCCACCCAACTCGGAAACCCTAGTTCACCGCTCCTCGCTTCCGCATGACCTTGCCACTCATATGCAGGGCAGCTCTACCGCACATAAAGGTGGAAAAGCTGAGAGTAAGGTGTCAGCTCAGCCTCCTGATGAGGAAACTATTGAAAAAGATGCAGTTGAGGCACCTCAAAAACAGACAGAAAATCAACTTCAGTCTGTTTGTTCAACTTCATTATCTGAACTATCACCAACTTCTGTTTCACATTCTTTATCATCTGCCCTTAGTCCCACTGTATCACAACAGAGACCATCTCCTCCCAAGGCTAATAGTGTACAAGTGTCGAAAGGAGACAAAGGAACACCTTCTGATGGTACAACCTTATCTTCTGTTTCTGCTGTAAGGGCATCTGCATCTGATGGATACAACTGGCGGAAGTACGGCCAGAAGCAAGTGAAGAATCCTATGGGTTCTCGAAGCTATTACAAGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGACATGTGATAGAGATTGTTTATAAAAGTCAACATAATCATGATCCTCCGCATAAAATTGATACCACCAAGGAAAGTAAGCTCCTGCCTTCCAGTGAACCTAAAGAAGAAAGCAGTGTTCCAAAGCAGTCTACCAAAGTTCTGAATAATTCTGATCCATCATCTTCTCCGAAAGAACCTTTGCAAGAAGCACCCTGCAATGGTGATAAGAATCTAGAAAACTCATCTAATGTTGAGAATGGTAAAATTATTTTGAAGGAAAAGCATGTCAATGACCGAGAGCCAAAAAGAAGATTGAACAATGGTGATTTGGATTCAGCAGTAAAACATGGCAAGAAACCAAAGTTTGTTGTACATGCGACAGAGGATGTGGGGATATCAGGTGATGGATACCGGTGGCGCAAGTATGGACAAAAGTTGGTGAAGGGAAATCCACATTTCAGATGCACTTCTTCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATAATTCAAAAGCTCTCATCATAACATACAAGGGAGTGCATGATCATGACATGCCTGTACCCAAGAAACGACATGGCCCGCCTAGTGCTTCACTTGTGGCTGCGGCAGCACCTGCTTCAATGAACAATGTGCAGTTCAAAAAAACTGGCTTGCTGCAAAGCCAGGAAACTGAAGCTCAATGTTCAGAGGACACAGAAGGAGAATTGATGGGGGAAGCGATGGACCTTGAGGGTGAGAAAGCAATTGAGTCGGCTCGAACTCTTTTGAGCATAGGTTTTGAAATTAAACCTTGTTGA 1392 0.4411 MEEDEETQQRVTDSSLSTESRTSTPSDGAPPNSETLVHRSSLPHDLATHMQGSSTAHKGGKAESKVSAQPPDEETIEKDAVEAPQKQTENQLQSVCSTSLSELSPTSVSHSLSSALSPTVSQQRPSPPKANSVQVSKGDKGTPSDGTTLSSVSAVRASASDGYNWRKYGQKQVKNPMGSRSYYKCTHSNCCAKKIKFCDHSGHVIEIVYKSQHNHDPPHKIDTTKESKLLPSSEPKEESSVPKQSTKVLNNSDPSSSPKEPLQEAPCNGDKNLENSSNVENGKIILKEKHVNDREPKRRLNNGDLDSAVKHGKKPKFVVHATEDVGISGDGYRWRKYGQKLVKGNPHFRCTSSGCPVRKHIETAVDNSKALIITYKGVHDHDMPVPKKRHGPPSASLVAAAAPASMNNVQFKKTGLLQSQETEAQCSEDTEGELMGEAMDLEGEKAIESARTLLSIGFEIKPC* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1261 463 MobiDBLite consensus disorder prediction 1 153 - -
Gso12g1261 463 ProSiteProfiles WRKY domain profile. 154 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 MobiDBLite consensus disorder prediction 85 153 - -
Gso12g1261 463 SMART WRKY_cls 328 383 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 SMART WRKY_cls 159 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 Pfam WRKY DNA -binding domain 161 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 Pfam WRKY DNA -binding domain 330 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 ProSiteProfiles WRKY domain profile. 323 384 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 Gene3D WRKY domain 146 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 Gene3D WRKY domain 313 385 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 MobiDBLite consensus disorder prediction 237 262 - -
Gso12g1261 463 SUPERFAMILY WRKY DNA-binding domain 322 384 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 MobiDBLite consensus disorder prediction 11 39 - -
Gso12g1261 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 461 IPR044810 GO:0003700
Gso12g1261 463 MobiDBLite consensus disorder prediction 210 233 - -
Gso12g1261 463 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 4 461 - -
Gso12g1261 463 MobiDBLite consensus disorder prediction 283 311 - -
Gso12g1261 463 SUPERFAMILY WRKY DNA-binding domain 158 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g1261 463 MobiDBLite consensus disorder prediction 210 311 - -
Gso12g1261 463 MobiDBLite consensus disorder prediction 67 84 - -
Gso12g1261 463 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1261 Gso-Chr12 25697943 25707755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1261 63 463 WRKY Transcription Factor Family AT4G30935 48.668 3.82e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso12g1261 WRKY 1.4e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1261 - - gmx:100127388 855.514