Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1259 ATGTTTGACTGTGGTTACAAGTCGCAATATGTGGGTGGGCAATGTGAAAAATTTGTGAGGTTGGATGACTTGGATTCTAGACTATCATCATCTTCTGAAGCTGCAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCATGGAAGCAGTACTACTTCTCGGTCTTTTAAAAGAAGAATTAGAAAGGGATCCGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTAGGGGTATCTAGGGCAGTGTTCCCTGAAGATCTTAAAGTTTCAGAAAAGAAGATATTTGACCCTCAAGACAAGTTTTTGCTCACCTGGAATAAGCTTTTTGTTATATCATGCATTTTAGCTGTGTCTGTTGATCCATTGTTTTTTTATCTCCCTGTCATCAATGATTCATTTCACTGTCTTGGTATCGACCGAAAGTTGGCAATTACAGTTACCACCTTGAGGACATTCATTGATGCTTTCTATCTCGTACACATGGCCCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAACGATACCTGCGGCGGTATTTCATTGTTGATTTTCTATCAGTGTTGCCTTTACCACAGATTGTGGTTTGGAGATTTCTGCAGAGGTCAAAAGGTTCAGTTGTACTTGCAACAAAGAGGGCCCTTCTGTTCATCATTTTGCATCAGTACATTCCTAGATTTTTCCGGATGGTACCGTTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTATTATTTATGCTTGCTAGTCATATAGTTGGGTCGTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAAAAGGCTTGTAGTGGCAATGGGTACAATAAAAATTTCTTGTATTGTGGCAACCAATACATGGAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGATATTCTTACATCACAGTGCTCTGTAGATAATGATAATTCACCTTTTGACTATGGAATTTTCAAACAAGCCTTGTCATCTCGTATTGTTTCATCTAAGAAGTTCTTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAAAATTTAAGTACACTTGGCCAGGGGCTTGAAACAAGCACCTACACTGGGGAGGTTGTCTTTTCAATAGCACTAGCCATAGCTGGCCTTATCCTATTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACAATTAGACTTGAGGAAATGAGAGTCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATACAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAGTTTGGTTCAGAGTTTGCCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGCTTATTTACAGAGAGTACTTACATTGTTCGTGAAGGAGATCCAGTTGATGAGATGCTCTTCATCATACGGGGTCGCCTTGAGAGTGTTACTACAGATGGTGGGAGGAGTGGATTCTTCAATCGTGGTTTTTTAAAAGAGGCCGACTTCTGTGGGGAGGAGCTTTTGACCTGGGCACTGGATCCCAAATCTGGCTCTAATCTCCCATCTTCTACTCGAACAGTTAAAGCTTTAACAGAAGTTGAAGCTTTTGCCTTAACTGCTGAAGAGTTAAAGTTTGTTGCCAGTCAGTTTAGGCGCCTGCACAGTAGACAGGTTCAGCACACCTTTCGCTTTTACTCCCAACAGTGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCCTGGCGTCGCTATTCCAAAAGGAAAACTATGGAGCTTAGTCAGAAGGACGAACCTGAGGAGTCAGAAGGAACTCGTGGCAATGCCAGTGGCAGTTCGTACAGCCTTGGTGCCACCTTCTTGGCCTCCAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGGAATCGGGAAGCCAAGAGTGCCAGGGAGTTGGTGAAACTACAGAAACCTCCAGAGCCTGACTTCACTGCTGATGATGCAGACTAA 2199 0.4311 MFDCGYKSQYVGGQCEKFVRLDDLDSRLSSSSEAAVKTCGFSIDKLSHGGHGSSTTSRSFKRRIRKGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLTWNKLFVISCILAVSVDPLFFYLPVINDSFHCLGIDRKLAITVTTLRTFIDAFYLVHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIVDFLSVLPLPQIVVWRFLQRSKGSVVLATKRALLFIILHQYIPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSGNGYNKNFLYCGNQYMEGYSAWQNRSKDILTSQCSVDNDNSPFDYGIFKQALSSRIVSSKKFFSKYCYCLWWGLQNLSTLGQGLETSTYTGEVVFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELSQKDEPEESEGTRGNASGSSYSLGATFLASRFAANALRGVHRNREAKSARELVKLQKPPEPDFTADDAD* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1259 732 SMART cnmp_10 505 636 IPR000595 -
Gso12g1259 732 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 729 - -
Gso12g1259 732 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso12g1259 732 MobiDBLite consensus disorder prediction 707 732 - -
Gso12g1259 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 729 - -
Gso12g1259 732 Gene3D Jelly Rolls 503 623 IPR014710 -
Gso12g1259 732 Pfam Cyclic nucleotide-binding domain 527 616 IPR000595 -
Gso12g1259 732 MobiDBLite consensus disorder prediction 659 681 - -
Gso12g1259 732 Gene3D Helix hairpin bin 433 496 - -
Gso12g1259 732 MobiDBLite consensus disorder prediction 659 674 - -
Gso12g1259 732 Gene3D - 111 430 - -
Gso12g1259 732 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
Gso12g1259 732 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Gso12g1259 732 CDD CAP_ED 505 636 IPR000595 -
Gso12g1259 732 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1259 Gso-Chr12 25497482 25511107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1259 1 730 Ion Channels AT2G23980 75.867 0.0 1141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1259 K05391 - gmx:100820202 1436.4