Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1249 ATGGAATCTAAATACTTTGACTCCAATGGGGAGGTCTCACTAAAGCAAAAATCAAAATCCATTTCAGCAGAGCCAACAATCTCTACTAGTGAATATGATTGCTTTGATTGCAACATTTGCATGGAATCAGCACATGACCCTGTGGTCACTCTCTGTGGCCACCTTTACTGCTGGCCATGCATATACAAGTGGCTTGATGTCCAAAGCTCCTCTGTTGAACCGTACCAGCAGCAGACATGCCCAGTTTGTAAATCAGAGATCTCTCACACTTCAGTAGTCCCCCTCTATGGCTGCGGAACATCGAACTCGGAATCCAATGCCAAGAAACTTCAGATGAGCCTGGGAATACCTCACAGGCAACCTCCTTGCAGCTTGAATGCTATGTTAACTTCTCCTCGCTCGCGGATTTCGCATCCTAGTCAGCAACTGCATCCAAGTTATTTCCAGACACAATCAAGACCATTTCATTATCAGCAGTTTTATGGAAGTTATGGTACCAATGGATTACCTTATCTTGGAGGTGCTTCTATGACTAGTTTCTTTAATACTGTGATTGATATGTTTGGGGAGATGGTCTTGACAAGGATTTTTGGGATCTCAGATGCAAATTTGTTTGCAAACCCTCTTAATGGAAGTGGAAGTTCTAGGATGAGAAGGCAGGAAATGCAGATTGACAAGTCTCTGAACAGACTATCTATTTTCCTCCTATGTTGCATCATGTTGTGTCTTCTCTTATTTTGA 741 0.4265 MESKYFDSNGEVSLKQKSKSISAEPTISTSEYDCFDCNICMESAHDPVVTLCGHLYCWPCIYKWLDVQSSSVEPYQQQTCPVCKSEISHTSVVPLYGCGTSNSESNAKKLQMSLGIPHRQPPCSLNAMLTSPRSRISHPSQQLHPSYFQTQSRPFHYQQFYGSYGTNGLPYLGGASMTSFFNTVIDMFGEMVLTRIFGISDANLFANPLNGSGSSRMRRQEMQIDKSLNRLSIFLLCCIMLCLLLF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1249 246 SUPERFAMILY RING/U-box 32 96 - -
Gso12g1249 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso12g1249 246 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Gso12g1249 246 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Gso12g1249 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 4 246 - -
Gso12g1249 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 108 IPR013083 -
Gso12g1249 246 Pfam zinc-RING finger domain 37 85 IPR001841 -
Gso12g1249 246 SMART ring_2 37 83 IPR001841 -
Gso12g1249 246 CDD RING-HC_AtRMA_like 35 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1249 Gso-Chr12 22864183 22866537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1249 2 232 C3H Transcription Factor Family AT4G27470 45.992 5.77e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1249 K10666 - gmx:100817526 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1249 12 22864183 22866537 Gso12g1249 12 22864183 22866537 ECH