Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1246 ATGGGTCCTCTTGTGATTTCTTCAAGGTTTCTTTGGTATTTTTGCTTTGTTCTAAGTGCAGTTAGAGTAGTCCACGTACAAGCTAATAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAAATCCCACCACCCTTGGGGGAGCATGTGGCTACGATGACACCTTTCATGCTGGGTTTGGTGTGAACACCGCAGCAGTCAGCACCATGCTATTCAGAGACGGGGAGGTTTGTGGTGCATGCTACCAGGTGATGTGTGACTATAGGGCAGACCCAAAATGGTGCCTTATTAGTCGCGGGGTGACAGTAACCGCCACAAACTTTTGCCCTCCGAACAACCACGGAGGGTGGTGTGACCCCCCTTACCATCACTTCGACATGTCTATGCCTGCTTTCTTTCGCATTGCACGACAAGGCAATGAAGGCATTGTTCCTGTCCTTTATAGAAGGGTGGCATGCAAAAGAAGAGGGGGAGTGAGGTTCACATTGAAGGGGCAATCCAACTTCAACATGGTGATGATATCCAATGTTGGTGGGAGTGGGGATGTGAAGGTTGTGTGGATCAGAGGATCCAGAAGTGGGGCATGGCTCCCAATGCACAGGAACTGGGGAGCCAACTGGCAGAGCAGTGCAGATCTCAGAAACCAAAGACTCTCGTTCAAGATGACATTGGTTGATGGGAAGACACTAGTGTTCCTCAATGTGGTGCCTTCCACTTGGAGGTTTGGACAGACTTTTTCATCCAAGAGTCAGTTCTTTTAG 771 0.4929 MGPLVISSRFLWYFCFVLSAVRVVHVQANNGWLNAHATFYGANQNPTTLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVMCDYRADPKWCLISRGVTVTATNFCPPNNHGGWCDPPYHHFDMSMPAFFRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMISNVGGSGDVKVVWIRGSRSGAWLPMHRNWGANWQSSADLRNQRLSFKMTLVDGKTLVFLNVVPSTWRFGQTFSSKSQFF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1246 256 SUPERFAMILY Barwin-like endoglucanases 16 179 IPR036908 -
Gso12g1246 256 PANTHER EXPANSIN-A12 6 255 - -
Gso12g1246 256 Gene3D - 161 256 IPR036749 -
Gso12g1246 256 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Gso12g1246 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Gso12g1246 256 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Gso12g1246 256 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Gso12g1246 256 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Gso12g1246 256 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Gso12g1246 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Gso12g1246 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Gso12g1246 256 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Gso12g1246 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Gso12g1246 256 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Gso12g1246 256 SMART dpbb_1 67 151 IPR007112 -
Gso12g1246 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 161 IPR007112 -
Gso12g1246 256 Gene3D - 17 157 IPR036908 -
Gso12g1246 256 PANTHER EXPANSIN-A15 6 255 IPR002963 GO:0009664
Gso12g1246 256 Pfam Lytic transglycolase 67 151 IPR009009 -
Gso12g1246 256 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Gso12g1246 256 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Gso12g1246 256 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Gso12g1246 256 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Gso12g1246 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Gso12g1246 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1246 Gso-Chr12 22703461 22706798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1246 13 256 Expansin Gene Family AT3G15370 60.727 1.99e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1246 - - gmx:106795376 550.436