Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1238 ATGGGAGTTCCAGAGAGAGACCCTCTTGCACAATTGAGCTTGCCTCCTGGATTTAGATTTTATCCCACTGATGAGGAGCTTTTGGTTCAGTACCTTTGCCGCAAGGTTGCTGGCCATCATTTCTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGGTAAGGCAGCGTTTGGAGAGAAGGAGTGGTACTTCTTCAGTCCAAGAGACAGGAAGTACCCGAATGGTTCACGACCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACTGGAACTGACAAAATCATCACCACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGCAAAGCACCCAAAGGCTCGAAAACCAATTGGATCATGCACGAGTATCGCCTTCTCGACTCTTCCCGCAAACACAACCTCGGAACCGCAAAGCTTGATGATTGGGTTCTGTGTCGTATCTATAAGAAGAACTCAAGTGCGCAAAAGGTTGAGGCAAATCTTTTGGCTATGGAATGTAGCAATGGGTCATCACCTTCTTCATCGTCCCACGTGGACGACATGCTGGAATCGTTGCCGGAGATCGATGATCGGTGCTTCACCCTGCCGCGAGTGAACTCAGTCAGAACAATGCAGCAGCAGGACGAGAAATTCGGATTTCAGAACATGGGATCCGGGTTTTTCACCGATTGGGTCAACCCGACGGATCTTGATTCAGTTTCCGAATTTGGGTCGGGTTGCCAAACCCAAGGGATGGTGAATTATGATTGTAATGACTTATTTGTCCCTTCTGTGCCGCCCTTCGGCCACAGCCATGTAAACTACATGGTGGGGGCACCACCGTCCGAGGAGGAGGTTCAAAGCGGTGTGAGGACTCAACAGGCCGATGGGGCCGCATGTTTTCAGCAGAACCCAAATGCCCGATTGTTACCGGGCTCGGGCGACCCATTTGGGTTTGGGTTCATCATGGGTCAGCAAGTTGAGTTCGGGTTTAGGGACTGA 1023 0.4936 MGVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPGKAAFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLLDSSRKHNLGTAKLDDWVLCRIYKKNSSAQKVEANLLAMECSNGSSPSSSSHVDDMLESLPEIDDRCFTLPRVNSVRTMQQQDEKFGFQNMGSGFFTDWVNPTDLDSVSEFGSGCQTQGMVNYDCNDLFVPSVPPFGHSHVNYMVGAPPSEEEVQSGVRTQQADGAACFQQNPNARLLPGSGDPFGFGFIMGQQVEFGFRD* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1238 340 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Gso12g1238 340 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Gso12g1238 340 PANTHER NAC TRANSCRIPTION FACTOR 56 1 317 - -
Gso12g1238 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 317 - -
Gso12g1238 340 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Gso12g1238 340 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1238 Gso-Chr12 22228973 22231157 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1238 1 281 NAC Transcription Factor Family AT4G27410 60.066 9.61e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g1238 NAM 6.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1238 - - gmx:100811301 704.131