Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1236 ATGGAGAGCACCGAAGACTCATCCACGAGTTCACAGCAACAACCGAACCTGCCACCCGGGTTTCGGTTCCACCCCACAGACGAGGAGCTCGTGGTTCATTACCTCAAGAAGAAAGTAGATTCTGTTCCTCTCCCTGTTTCAATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCCAAAGCATCGTTTGGGGCGGAAGAGTGGTACTTTTTCAGCCCGAGAGAAAGGAAGTACCCGAATGGCGCGAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAAGCCACGGGGACAGATAAGCCTATATGTAGTGGAACTCAAAAGGTTGGGGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAGCCACCAAAAGGGGTCAAAACCGATTGGATCATGCATGAGTACCGTGTTACTGAAAACAAGCCAAACAATAGGCCTCCTGGGTGTGACTTGGGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTGTTGTGCCGAATCTACAAGAAGGGCAACACACAAAGGTCACATGAGAGGGACGATTCCATTGATGACATGATTGGAGAAGTACCTCCTTCCATCAACGTGGGCCACATGAGTGCGAGGTTTCACCTTTCAAGGATGTCCACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGGGTGGTTATAGGCAATGGTAGTGTGAATGGGATCAGCAATACTAATAATATTACAAGTGTCATATCATCATCTCATCAGTTTGGCACCTCAAACTCCAAGGCAGAGCTTCTTCCTTTTGTCCCTTCAAACAACACTTCTAATTCGGCCTCCAAAAGAACACTCTCATCACTCTATTGGAATGTTGATGATCACAAACACTTCAATTTGGACAGTAATGGGAATGTGAGTGTTTTGAGGACAGATCAAGAGAATAATAATAATAATAATGGTACTTCTGGCTCCTTTGCTACTCTGCTTAACCAGCTTCCACAAACACCTTCATTGCCCCAAATAGATGGGTTACTTCGGACACCGTATCAAATACAAGGGACCAATTGGTATGGTTAA 1083 0.4561 MESTEDSSTSSQQQPNLPPGFRFHPTDEELVVHYLKKKVDSVPLPVSIIADVDLYKFDPWELPAKASFGAEEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRVTENKPNNRPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSHERDDSIDDMIGEVPPSINVGHMSARFHLSRMSTSYSGALLENDRNTLEGVVIGNGSVNGISNTNNITSVISSSHQFGTSNSKAELLPFVPSNNTSNSASKRTLSSLYWNVDDHKHFNLDSNGNVSVLRTDQENNNNNNGTSGSFATLLNQLPQTPSLPQIDGLLRTPYQIQGTNWYG* 361
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1236 360 MobiDBLite consensus disorder prediction 1 19 - -
Gso12g1236 360 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 340 - -
Gso12g1236 360 SUPERFAMILY NAC domain 8 176 IPR036093 GO:0003677|GO:0006355
Gso12g1236 360 MobiDBLite consensus disorder prediction 1 22 - -
Gso12g1236 360 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Gso12g1236 360 PANTHER NAC TRANSCRIPTION FACTOR 56 1 340 - -
Gso12g1236 360 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Gso12g1236 360 Gene3D NAC domain 26 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso12g1236 Gso-Chr12 22141973 22144772 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1236 1 359 NAC Transcription Factor Family AT3G15510 52.151 7.56e-114 333
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g1236 NAM 5.8e-39 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1236 - - gmx:100811670 700.664