Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1229 ATGTTGAAGATGGAACTTATAAAATGGGTTCCCTATGTTGTGGTTGTTGCTTTTCTAGTTTTTGTTAATGGGTCATTTGCCTTGTACACTCCTCCTGATAGATATCTAATTGCTTGTGGCTCTTCTCAAAATGTCACCTTTCAAGGTCGCACTTTTGTTCCTGATTCACAGCATTCTTCACTTGTGATGAAAACTGGGAATTCTGTTATTGCCAGTTCCAATTCTAGTAGTGCCCCTCTTCCTATTTACCAATCGGCTCGGGTTTTCACCGAGAAAGCTTCCTATAGGTTTAAGATTCAGCAAGAAGGTAGGCACTGGGTTAGGCTATATTTTTCCCCTATTCCAAACTCTGCCCACAACTTGACTTCAGCTTCTTTAACAGTGGTTACTGATGATTTTGTACTCTTGAGCAACTTCACCTTTAGGAAATTCAATGGTTCTTATATGTTCAAGGAGTATGCAATCAATGTTACCTCTGATACATTGGTTGTCACCTTCATTCCTTCGAATGGTTCAGTGGCCTTTGTCAATGCAATTGAAGTCGTGTCAATGCCGAATGAGTTGTTTTTTGATCATGCACTGGCTGTTAACCCGCCAGCAACATTCAGTGGACTTTCTGAACTTGCCTTTGAAACTGTTTATCGCTTGAACATGGGGGGTCCTTTGATTACTGCCCAAAATGACACCCTGGGTAGGACTTGGGTGAATGATAGGAAATACCTTCATGTCAACAGCTCGGTCCTTAATGTGTCGGTGAATCCTTCAAGCATTAAGTATCCGGTGGCTGTTACACCTGAGACAGCCCCAAATTGGGTCTATGCCACTGCTGAAGCAATGGGGGATGCTAATGTAAATGATCCAAATTTCAACATTACTTGGGTCTTCAATGTGGATCCAAATTTCTCCTATTTCATCCGGGCACACTTTTGTGATATTATGAGCAAGTCACTCAACACTTTAGTGTTCAATGTGTTCGTAAATTCTGACATAGCTCTTCAAAGCTTTGACATCTCATCCATAACTAATGACTTGGCTGTGCCGTACTACAAGGACTTCGTTGCCAATTCCTCAGCAGACTCTAGCACTTTGACTGTGAGTGTTGGACCAGATACTGTGGCAGACTTCCCAAATGCCACTATGAATGGATTGGAGATAATGAAGATCAGCAACACGTTAAAGAGCTTGGATGGGCTTTATTCAGTTGACAGTCTTCTTCCAAGTTCACATTCTAAGAAAAACATGGTAGGAGTAATAGTTGGTTCGGCTGTTGTAGCTCTTGCTGCTGTAGCAATGGTTGGTTTATGTTATTGCTGCTTGATGAGACGCAAATCAGAGTCATCCACTCAACAGGGCCATTCATGGCTGCCTTTACCCCTTTATGGAAACTCTCTTACCATGACAAAGAATTCAACAATTTCACAGAAGAGTGGAACTGCAAGCTGCATTTCTTTAGCTTCATCAAATCTTGGACGATTCTTCAGTTTCCAAGAAATCCTAGATGCTAGCAACAAATTTGATGAGAAGCTACTTCTTGGTGTCGGTGGTTTTGGAAGGGTTTATAAGGGAACGCTTGAAGATGGGACCAATGTAGCTGTTAAAAGGGGTAATCCGAGATCCGAGCAAGGCCTTGCTGAATTCCGGACAGAAATTGAAATGTTGTCCAAGCTTCGCCATTGTCATCTTGTGTCCCTCATTGGTTATTGCGATGAGAGGTCAGAAATGATTCTTGTGTATGAATACATGGCTAATGGACCCCTCCGGAGTCATTTGTATGGTACGGACCTGCCACCTCTATCATGGAAGCAGCGGCTTGAGATTTGCATTGGAGCAGCAAGAGGCCTTCATTATCTCCACACTGGCGCAGCTCAAAGCATTATTCATCGAGATGTAAAGACAACAAATATCCTCTTAGATGAGAACTTTGTTGCTAAAGTTGCCGATTTTGGCCTCTCCAAGACTGGTCCTTCTCTCGATCAAACCCATGTGAGTACTGCTGTTAAGGGTAGTTTTGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAGCTTACTGAGAAATCAGATGTGTATTCATTTGGGGTGGTGTTAATGGAAGTGTTATGCACAAGGCCAGCCTTGAACCCTGTCCTTCCAAGGGAGCAGGTTAACATAGCTGAGTGGGCAATGACCTGGCAGAAAAAGGGTATGCTTGACCAAATCATGGATCAAAATCTTGTTGGCAAGGTGAATCCTGCTTCCCTTAAGAAGTTTGGGGAGACAGCCGAGAAGTGCTTGGCCGAGCACGGCGTGGACCGGCCATCAATGGGAGATGTTTTGTGGAATCTTGAATATGCATTGCAGCTTCAAGAGACCTCATCAGCACTCATGGAACCGGAAGATAACAGCACGAACCACATCACTGGAATTCAGTTGACACCCCTTGACCATTTTGATAACAGTGTGAGTATGATTGATGGGGGCAACTCTTGCACTGATGATGATACAGAAGATGTTGCCACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGTGGAAGATAA 2541 0.4333 MLKMELIKWVPYVVVVAFLVFVNGSFALYTPPDRYLIACGSSQNVTFQGRTFVPDSQHSSLVMKTGNSVIASSNSSSAPLPIYQSARVFTEKASYRFKIQQEGRHWVRLYFSPIPNSAHNLTSASLTVVTDDFVLLSNFTFRKFNGSYMFKEYAINVTSDTLVVTFIPSNGSVAFVNAIEVVSMPNELFFDHALAVNPPATFSGLSELAFETVYRLNMGGPLITAQNDTLGRTWVNDRKYLHVNSSVLNVSVNPSSIKYPVAVTPETAPNWVYATAEAMGDANVNDPNFNITWVFNVDPNFSYFIRAHFCDIMSKSLNTLVFNVFVNSDIALQSFDISSITNDLAVPYYKDFVANSSADSSTLTVSVGPDTVADFPNATMNGLEIMKISNTLKSLDGLYSVDSLLPSSHSKKNMVGVIVGSAVVALAAVAMVGLCYCCLMRRKSESSTQQGHSWLPLPLYGNSLTMTKNSTISQKSGTASCISLASSNLGRFFSFQEILDASNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHCHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTPLDHFDNSVSMIDGGNSCTDDDTEDVATSAVFSQLVNPRGR* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1229 846 Gene3D Phosphorylase Kinase; domain 1 464 580 - -
Gso12g1229 846 CDD STKc_IRAK 511 776 - -
Gso12g1229 846 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Gso12g1229 846 Gene3D Transferase(Phosphotransferase) domain 1 581 800 - -
Gso12g1229 846 SMART serkin_6 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1229 846 ProSiteProfiles Protein kinase domain profile. 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1229 846 Gene3D - 34 185 - -
Gso12g1229 846 Gene3D - 208 390 - -
Gso12g1229 846 PANTHER OS07G0166700 PROTEIN 21 838 IPR045272 GO:0004714|GO:0006468
Gso12g1229 846 Pfam Protein tyrosine and serine/threonine kinase 510 772 IPR001245 GO:0004672|GO:0006468
Gso12g1229 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Gso12g1229 846 SUPERFAMILY Protein kinase-like (PK-like) 484 776 IPR011009 -
Gso12g1229 846 Pfam Malectin-like domain 37 388 IPR024788 -
Gso12g1229 846 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 21 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1229 Gso-Chr12 21761478 21764936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1229 29 846 Receptor kinase-like Gene Family AT3G46290 53.494 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso12g1229 Malectin_like 4.3e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1229 - - gmx:100809700 1640.55