Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1218 ATGGTGTTATCGGCTTCGCCATGTTCCTTGGCGAGAAGCTCGCTAGAGGAGATGCTCGATTCCCTTCGCCGGAGGGACGAGGAGGAGGAGAAGAAGGACTCGCCACCGGCGTTGCCCGCGAGGCCGGCCTCGCGGGCACGGCTTCCTCCGGCACGGCGGTCGCTGCCGAACAACTTCAGGGTTGGCGGCAGCCAGCGCGTCATCGCGCCCGAAAATGGAGTCGGTACTAATGGGGAGAGTGACTTGAAGGAGAATGACTTGGGGCAGAAAAGGAGAAGAAATTGTTTTGAGAGAAAGAGGATGAACAAGGATGTGGAGTCTCCTTATGTGGCACTCTCTTCCAGTGATTCATCAGGGATGGTTTGGGAATTGGATGATGATGATAACATTTCTTATTTCATCAAAAAGAAGCTTCGTGTTTGGTGTAGGCAACCAAGAGGGCAGTGGGAACTAGGAACAATACAGTCAACTTCAGGAGAGGAAGCATCCATTTCACTCTCAAATGGAAATGTTATTAAAGTGGTCAGATCAGAGATTCTACCAGCGAATCCTGGTGTTTTAGAGGGTGTGGATGATCTTATTAAACTTGGTTATTTGAACGAGCCATCGGTTCTTCACAATCTGAAGTTGAGATATTCTCAAGGAATGATTTATAATAAAGCAGGGCCAATTTTAATTGCCCTCAATCCTTTCAAAGATCTTCAGACAAATGGAAATGATTATGTCTCAGCTTATAGGCAGAGAATTATTGATAGTCTTCATGTTTATGCTGTGGCAGATGTGGCTTATAACAAGATGATAAGAGATGAAGTAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAAACAGCTAAAATTGCATTGCAACACTTAGCTGCTCTTGGTGGTGGTGGCAGTTGTGCTATAGAAAATGAATTTCTTCAGATAAATCGTATACTAGAAGCTTTTGGGAATGCAAAAACATCTAGGAATAACAACTCTAGCAGATTTGGAAAGTTGATTGAAGTTCATTTCAGCTCCATGGGTAAAATATGTGGGGCTAAAATTAAAACCTTATTGTTGGAAAAGTCTAGAGTTGTTCAACTGGCCAATGGTGAGAGATCATATCACATATTTTATCAACTTTGTGCTGGATCTTCTTCTGATCTTAAAGAGAGACTGAATCTTAGAGCAGTCAGTGAATATAAATATCTAGTTCAGAGTGACTGCACATCAATTGATGATGCCGATGATGCTAAAAACTTTCCTCAGCTGAAGAAAGCCCTGGATACTGTTCAAATTTGTAAAGAGGATCAAGAGATGATCTTTAAGATGCTCGCTGCAATACTATGGCTGGGAAATATATCATTCCAAGTAGACAGTGAAAATCACATTGAGGTTGTTGATGATGAAGCTGTAACCAGTACTGCCCAGCTGATGGGTTGCAGTTCCCAGGAATTAATGACAGCATTATGTAGCCATAAAATTCAATCTGACGAGGATACTATTGCCAAAAATCTGACATTGAGGCAGGCAATCGAAAGAAGAGATGCAATTGCAAAATTCATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTGGGTAAACAATATACTGGGAAATCCATAAGTATCCTAGATATTTATGGGTTTCAGACTTTCCAGAAAAACAGCTTTGAACAGTTTTATATAAATTATGCCAATGAGAGGATTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGATTATGAATTGGATGGCGTTGATTGGACTAAGGTAGATTTTGAGGATAATGAAGTGTGCTTGGATCTATTTGAGAAGAAACCTCACGGTCTACTCTCTTTATTGGATGAGGAGTCAAATTTAGCCAAGGCTTCTGATTTAACATTTGCCAACAAACTTAAGCACCACCTGAATGCTAATCCTTGCTTCAAAGGAGAAAAAGGCAGAGCTTTCCGTGTTCGTCACTATGCAGGGGAGGTTCTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGACATGTTGTCTTCTGATTCCATTCAATTCCTGTCATCATGTAATTGTGAACTGCTGCAGTTGTTCTCCAAAATGTTTAACCAGTCTCAAATGCAGAGTGTTGCAACAAAGTTCAAGGTTCAATTGTTCATGTTGATGCATCAGTTGGAGAGTACCACACCTCACTTTATTCGCTGTATAAAGCCAAATACTAAGCAGCTTCCTGGCATTTTTGATGAAGTCCTTGTCCTACAACAGCTCAGATGTTGTGAAGTTCTAGAAGTTGTTAGAGTTTCAAGGGCTGGATATCCTACTCGAATGGCCCATCAAGAGTTTTCCAGAAGGTATGGGTTTCTGCTTTCTGAGGCCAATGTATTGCAGGATCCATTGAGCATCTCGGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCATGTTGGCTACACCAAATTGTATCTTCGAGCAGGGCAGATTGATTCACTGGAGAATAAGAGAAAGCAGGTTTTACAGGGAATACTTGGGATTCAAAAATGCTTCCGTGGTCATCGAGCTCGTGTTTATTTCTGTGAACTTAAGAATGGAGTGACAACATTGCAATCATTTATTCGTGGAGAAAATACAAGAAGGAAATATGGTGTTACAGTGAAGTCTTCAGTAACAATTTATTCTAGAATACTGGAGGAGATCCATGCAATCATACTATTACAATCTGTAATTCGTGGTTGGCTGGTTAGAAGGGGGGATGCTAGTCACATAAATAGGTCAAAGAGATATCCTGAAAATGCTAAACCTAGGTGGAAGTCCTTTATGAAGATAATACCGGAAGTAAAGCCGGACTTGTCCAAAGAGCCGGTTCAGAATCTGCTTTCAGCTTTAGCAGATCTCCAAAGGCGAGTTGACAAGGCTGATGCAATTGTGAAGCAAAAGGAAGACGAAAATACCGAATTGAGGGAACAGCTAAAACAATCTGAGAGGAAGAGGATCGAATATGAGACAAAAATGAAATCAATGGAGGAGGCTTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTCCCGAGAATGCTTCAGTTCAGCCTGTAAGACGTGATTTTGTGCTACCTCGTGGTTATGATTCTGAAGATGCTACATCCATGGGATCTCGAACACCTGGTGGGAGCACACCAATGCTTTCTGGTAGTCTATCTGCCTCTGATGCAGGGAGACAGGTCAATGGTACATTGACCACAGTTGGCAATCTGATGAAGGAATTCGAGCAGGAAAGACAGAACTTTGATGATGAAGTGAAAGCTTTGAACGATGTTAAACCGGAGCAGTCTGCCAATACAAATTCCTTTGAAGAGCTTCGGAAACTGAAACAGAGATTTGAGGGATGGAAGAATCAATACAAGGTTAGATTACGAGAGACTAAAACAAGGCTTTATAAATCAGAAACGGAAAAAAGTCGGCGAACATGGTGGGGGAAGTTAAGCTCAAAAGCATAA 3543 0.4143 MVLSASPCSLARSSLEEMLDSLRRRDEEEEKKDSPPALPARPASRARLPPARRSLPNNFRVGGSQRVIAPENGVGTNGESDLKENDLGQKRRRNCFERKRMNKDVESPYVALSSSDSSGMVWELDDDDNISYFIKKKLRVWCRQPRGQWELGTIQSTSGEEASISLSNGNVIKVVRSEILPANPGVLEGVDDLIKLGYLNEPSVLHNLKLRYSQGMIYNKAGPILIALNPFKDLQTNGNDYVSAYRQRIIDSLHVYAVADVAYNKMIRDEVNQSIIISGESGSGKTETAKIALQHLAALGGGGSCAIENEFLQINRILEAFGNAKTSRNNNSSRFGKLIEVHFSSMGKICGAKIKTLLLEKSRVVQLANGERSYHIFYQLCAGSSSDLKERLNLRAVSEYKYLVQSDCTSIDDADDAKNFPQLKKALDTVQICKEDQEMIFKMLAAILWLGNISFQVDSENHIEVVDDEAVTSTAQLMGCSSQELMTALCSHKIQSDEDTIAKNLTLRQAIERRDAIAKFIYASLFDWLVEQVNKSLEVGKQYTGKSISILDIYGFQTFQKNSFEQFYINYANERIQQHFNRHLFKLEQEDYELDGVDWTKVDFEDNEVCLDLFEKKPHGLLSLLDEESNLAKASDLTFANKLKHHLNANPCFKGEKGRAFRVRHYAGEVLYDTNGFLEKNRDMLSSDSIQFLSSCNCELLQLFSKMFNQSQMQSVATKFKVQLFMLMHQLESTTPHFIRCIKPNTKQLPGIFDEVLVLQQLRCCEVLEVVRVSRAGYPTRMAHQEFSRRYGFLLSEANVLQDPLSISVAVLQKFNIPSEMYHVGYTKLYLRAGQIDSLENKRKQVLQGILGIQKCFRGHRARVYFCELKNGVTTLQSFIRGENTRRKYGVTVKSSVTIYSRILEEIHAIILLQSVIRGWLVRRGDASHINRSKRYPENAKPRWKSFMKIIPEVKPDLSKEPVQNLLSALADLQRRVDKADAIVKQKEDENTELREQLKQSERKRIEYETKMKSMEEAWQKQMASLQMSLVAARKSLAPENASVQPVRRDFVLPRGYDSEDATSMGSRTPGGSTPMLSGSLSASDAGRQVNGTLTTVGNLMKEFEQERQNFDDEVKALNDVKPEQSANTNSFEELRKLKQRFEGWKNQYKVRLRETKTRLYKSETEKSRRTWWGKLSSKA* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1218 1180 ProSiteProfiles IQ motif profile. 848 875 IPR000048 GO:0005515
Gso12g1218 1180 Coils Coil 963 1018 - -
Gso12g1218 1180 MobiDBLite consensus disorder prediction 1062 1087 - -
Gso12g1218 1180 Pfam IQ calmodulin-binding motif 850 866 IPR000048 GO:0005515
Gso12g1218 1180 Pfam IQ calmodulin-binding motif 908 924 IPR000048 GO:0005515
Gso12g1218 1180 Pfam IQ calmodulin-binding motif 873 889 IPR000048 GO:0005515
Gso12g1218 1180 Gene3D Myosin VI head, motor domain, U50 subdomain 429 536 - -
Gso12g1218 1180 PRINTS Myosin heavy chain signature 218 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 PRINTS Myosin heavy chain signature 272 297 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 PRINTS Myosin heavy chain signature 316 343 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 PRINTS Myosin heavy chain signature 547 575 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 PRINTS Myosin heavy chain signature 600 628 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 PANTHER MYOSIN-2 ISOFORM X1 120 1179 - -
Gso12g1218 1180 Coils Coil 1101 1121 - -
Gso12g1218 1180 MobiDBLite consensus disorder prediction 1 95 - -
Gso12g1218 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 890 IPR027417 -
Gso12g1218 1180 ProSiteProfiles IQ motif profile. 906 935 IPR000048 GO:0005515
Gso12g1218 1180 Gene3D - 372 428 - -
Gso12g1218 1180 Gene3D Kinesin motor domain 188 777 IPR036961 -
Gso12g1218 1180 MobiDBLite consensus disorder prediction 17 36 - -
Gso12g1218 1180 SMART iq_5 905 927 IPR000048 GO:0005515
Gso12g1218 1180 SMART iq_5 868 890 IPR000048 GO:0005515
Gso12g1218 1180 SMART iq_5 845 867 IPR000048 GO:0005515
Gso12g1218 1180 Coils Coil 12 32 - -
Gso12g1218 1180 Gene3D - 778 845 - -
Gso12g1218 1180 MobiDBLite consensus disorder prediction 1057 1087 - -
Gso12g1218 1180 PANTHER MYOSIN 120 1179 - -
Gso12g1218 1180 CDD MYSc_Myo8 202 832 IPR036022 -
Gso12g1218 1180 Gene3D - 850 894 - -
Gso12g1218 1180 Gene3D - 559 734 - -
Gso12g1218 1180 ProSiteProfiles Myosin motor domain profile. 188 844 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 Pfam Myosin head (motor domain) 190 832 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 135 184 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso12g1218 1180 ProSiteProfiles IQ motif profile. 869 898 IPR000048 GO:0005515
Gso12g1218 1180 SMART MYSc_2a 182 845 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1218 Gso-Chr12 21444091 21462242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1218 1 1175 Myosins gene family AT5G54280 58.177 0.0 1393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1218 K10357 - gmx:100802074 2253.79