Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1210 ATGACATTGACTTTTAGGCTCACATCCTTAACAACATTGCTTTTCCTATGTATGTTTTGCGTGAATGCAACTACCTACAAAGAATATCTGTGGATGGATCAATCACTGGGAACCTCAGACACCATTCTTTCTCGCAGTGGGAACTTCGAACTCGGGTTTTTCCCGGCAGTCAGAGAGAACTCCACCAACTACTATATAGGCATATGGAATAAAAAGGGTGGAAGTGACAAAAACAAGATTATGTGGGTTGCAAATAGAGACTATGCAGTTCAAGCATCTTCAGCAGCTCTTACTATTCAAGAAACTGAAGGAAATATTATAATCATAGATAGACAAATGACGTACCACGTGAGCCAGATTTCAAACAATTCTATTACCTATGCCAAGCTCTTGGATTCCGGAAACTTGTTACTGCTGAACAACTTCACCCAAGAGATTTTGTGGCAGAGTTTTGATTATCCTACGGATACCCTTTTACCCGGAATGAACCTAGGGTATGATACTGACTCAGGTTACACTTGGTCATTGAGCTCATGGAAAAGTGCAGACGACCCTGCCCCGGGAGCTTTTTCCCTCAAGTATGATTTTGGCAGGGCCACTCTAATCATCAACAACGGTTCTAACGTGTTCTGGATTGATGACCGTTCCAATGATACTATTGACAATGTTATTAGCCGAAGTGGTGTGCATAAAGAAAGATACAGGAGATATTTCACTTGGCCAGTTGATTATAACTCTATGCTGGTGCTAGAAGTGTCTGGGGAGCTGAACCAGAAATATTGGTCAGAGGAAGAAAAAGGTTGGATTTCTATTCAGTCATCAAAGTGTGGAACCAACAATTTGTGTGGAGCTTTTTCCATTTGTAACCCTCAAGCTCTTGACCCTTGTGACTGTCTCCATGGTTTCAAGCCCTTTGATGCTAATTCCTGGAGTAAAGGGATCAAATCCGCTGGCTGTGTCAGGAAAAAAGAGTTATCCTGCCGTAACGGTGTTCATTCCAATGATGTATTCATGCCACTCAACAAAACGCAATTACCATCAACTTTGAAGGGAGACAGCAAGATAAAGATTGATACGGAAAGAGGGTGTGAAAGTGCTTGTTCTAGAAAGTGTTCTTGTGTTGCTTATGCTTATAATTTGAATGGTTACTGCCACTTGTGGCTTGGTCAGATATTGAATCTAAAGAACATCTCAACATATGTGGACAATTCTGATAATACCAATCCAATTTTTAACCTCAGACTTGATGCCTCAGAATTGGTTCCCGCTGATTCAAACACAGCCAATGCCAAAGAACCAGCAAATGATTTTCGCAAACATGAAAACTGGCTGAGGATACTTCTGATTGTTATACTGATCACACTTCTAACGTTTCTTATATTTGGCCTATTTGTTTACTGGATTAGAAAGCAAAGGAGGAAAGGGGAAGATTTGCTACATTTTAATGTGAGCATGAGCATGAAAGCTGAAGATTCTGAACTTACTGAAGCAAGGAGAGCAAAAGTTAAGAAGAAGGAAGTCAAATTGCCATTATTCAGTTTTGTGAGTGTTGCAGCAGCAACTAATAATTTTTCAGATGATAATAAACTTGGTGAGGGTGGCTTTGGACCTGTATACAAGGGCATATTATTGAATGGGGATGAGGTTGCAGTAAAAAGGCTATCGCGAAGATCTGGTCAAGGATGGGAAGAGCTGAGAAATGAAGCCTTATTAATTGCAAAACTCCAACACAACAATCTTGTTAGACTTCTAGGGTGCTGCATTGATCAAGAAGAAAAGATGCTTATTTATGAATTTATGCCTAATAGAAGCTTGGATGTTTTTCTCTTTGATGCAACAAAAAGAAGGATGCTAGATTGGGGATCACGAGTTAGGATAATTGATGGAATTGCCCAAGGAGTCCTTTATCTTCACCAATATTCCAGGTTCCGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTAGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGTGAGAATGAACTTCAAGCAAGTACAAAAAGAATAGTTGGAACATATGGATACATGTCCCCAGAATATGCAATGGAAGGTGTTTTCTCAATAAAATCAGACGTGTTTAGCTTTGGGGTTCTTTTGTTGGAGATTATAAGTGGCAAGAAGAATACTGGCTTTTATCAAACAAATTCCTTATGTCTTCTAGGATATGCTTGGGATCTATGGACAAACAATTCCGTAATGGACCTAATGGATCCGACATTGGATGATAGTGATAGCACTAGTAGTCGAAATCATACAGTGCCAAGATATGTGAACATAGGACTTCTCTGTGTTCAAGAAAGTCCAGCAGATAGGCCAACCATGTCTGATGCTGTATCAATGATTGGGAATGACAATGTGGCCCTTCCTTCTCCTAAACCACCTGCATTTCTAAATGTGAGAGGTAATCAAAATTCAATATTGCCCAATAGCATACCAGAAAGTTTTTCTCTAAATGTCATCACAAACACAATCGTGGAACCAAGATGA 2538 0.3956 MTLTFRLTSLTTLLFLCMFCVNATTYKEYLWMDQSLGTSDTILSRSGNFELGFFPAVRENSTNYYIGIWNKKGGSDKNKIMWVANRDYAVQASSAALTIQETEGNIIIIDRQMTYHVSQISNNSITYAKLLDSGNLLLLNNFTQEILWQSFDYPTDTLLPGMNLGYDTDSGYTWSLSSWKSADDPAPGAFSLKYDFGRATLIINNGSNVFWIDDRSNDTIDNVISRSGVHKERYRRYFTWPVDYNSMLVLEVSGELNQKYWSEEEKGWISIQSSKCGTNNLCGAFSICNPQALDPCDCLHGFKPFDANSWSKGIKSAGCVRKKELSCRNGVHSNDVFMPLNKTQLPSTLKGDSKIKIDTERGCESACSRKCSCVAYAYNLNGYCHLWLGQILNLKNISTYVDNSDNTNPIFNLRLDASELVPADSNTANAKEPANDFRKHENWLRILLIVILITLLTFLIFGLFVYWIRKQRRKGEDLLHFNVSMSMKAEDSELTEARRAKVKKKEVKLPLFSFVSVAAATNNFSDDNKLGEGGFGPVYKGILLNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDQEEKMLIYEFMPNRSLDVFLFDATKRRMLDWGSRVRIIDGIAQGVLYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFGENELQASTKRIVGTYGYMSPEYAMEGVFSIKSDVFSFGVLLLEIISGKKNTGFYQTNSLCLLGYAWDLWTNNSVMDLMDPTLDDSDSTSSRNHTVPRYVNIGLLCVQESPADRPTMSDAVSMIGNDNVALPSPKPPAFLNVRGNQNSILPNSIPESFSLNVITNTIVEPR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1210 845 Gene3D - 22 151 IPR036426 -
Gso12g1210 845 Gene3D Transferase(Phosphotransferase) domain 1 600 804 - -
Gso12g1210 845 SUPERFAMILY Protein kinase-like (PK-like) 507 797 IPR011009 -
Gso12g1210 845 Pfam D-mannose binding lectin 80 180 IPR001480 -
Gso12g1210 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 185 IPR036426 -
Gso12g1210 845 SMART ntp_6 332 407 IPR003609 -
Gso12g1210 845 CDD PAN_AP_plant 325 395 - -
Gso12g1210 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 24 842 - -
Gso12g1210 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Gso12g1210 845 ProSiteProfiles Bulb-type lectin domain profile. 27 151 IPR001480 -
Gso12g1210 845 Pfam PAN-like domain 331 393 IPR003609 -
Gso12g1210 845 Pfam S-locus glycoprotein domain 232 304 IPR000858 GO:0048544
Gso12g1210 845 Gene3D Phosphorylase Kinase; domain 1 483 599 - -
Gso12g1210 845 ProSiteProfiles PAN/Apple domain profile. 327 404 IPR003609 -
Gso12g1210 845 ProSiteProfiles Protein kinase domain profile. 524 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1210 845 CDD STKc_IRAK 530 798 - -
Gso12g1210 845 Pfam Protein tyrosine and serine/threonine kinase 527 796 IPR001245 GO:0004672|GO:0006468
Gso12g1210 845 SMART blect_4 33 154 IPR001480 -
Gso12g1210 845 PIRSF SRK 1 845 IPR024171 GO:0004674
Gso12g1210 845 SMART serkin_6 524 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1210 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1210 Gso-Chr12 20507053 20511361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1210 499 831 Receptor kinase-like Gene Family AT4G23250 56.932 1.16e-124 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1210 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1210 - - gmx:102668647 1657.88