Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1209 ATGGTGGACAACTTCAGAATGTTGTTTATTTGGTTCTTATTATTCTCGTACTTGAGAAACTCCACTTCTTTGGACAGTTTAGCTCCGAGTCAATCTATCCGAGATAGTGAGCGATTAGTTTCAAAAGAAGGAACATTTGAAGCAGGTTTCTTTAGCCCTGGAACTTCAACAAGACGATACCTGGGAATATGGTACAGGGATGTGTCTCCTTTAACAGTGGTGTGGGTGGCTAACCGAGAAAAACCAGTTTATAACAAATCAGGAGTTTTAAAACTCGAGGAAAGAGGGGTTCTTATGATTCTTAATAGCACCAACAGCACAATTTGGAGGTCCAACAACATATCAAGCACAGTAAAGAATCCAATTGCACAGCTCTTGGACTCAGGAAATCTTGTGGTGAGAAATGAACGGGATATAAACGAGGACAACTTTTTGTGGCAGAGTTTTGATTATCCGTGTGATACTTTTTTGCCAGGAATGAAGTTGGGATGGAACTTAGTAACTGGTCAAGACAGGTTTCTGTCATCTTGGAAAAGCGAAGATGACCCTGCTAAGGGAGATTATTCTTTGAAACTTGATCTTAGAGGATATCCAGAATTTTTTGGATACGAGGGGGATGCAATAAAATTTAGAGGAGGCTCGTGGAATGGAGAGGCTTTGGTGGGCTATCCAATTCATCAACTCGTACAACAACTTGTATATGAATTTGTGTTTAATAAAAAGGATGTGTATTATGAATATAAGATCCTTGATAGATCGATTATCTACATATTTACATTGACCCCATCAGGGTTCGGCCAACGTTTCCTTTGGACAAATCAAACGAGCAGTAAAAAAGTTCTCTCTGGTGGGGCAGATCCGTGTGAAAACTATGCTATATGTGGTGCAAATTCTATATGCAATATGAATGGTAACGCTCAGACATGTGATTGCATCAAAGGATATGTTCCAAAGTTCCCTGGACAATGGAATGTATCATATTGGTCCAATGGCTGTGTTCCAAGGAATAAATCTGATTGTAAAACCAGCAACACAGATGGCTTGTTGAGGTATACAGACATGAAAATTCCAGATACATCTTCATCATGGTTCAATAAGACCATGAATCTTGAGGAATGTCAGAAGTCTTGTCTGAAAAACTGTTCTTGTAAAGCATGTGCAAATTTGGATATTCGTAATGGAGGAAGTGGCTGTTTACTTTGGTTTGATGATCTGGTTGATATGAGACAATTCTCTAAAGGGGGACAAGACCTTTATTTCAGAGCCCCTGCATCAGAGCTAGTTAATAGCCATGGGAAGAACTTGAAAAAGTTGCTAGGAATCACAATTGGTGCGATTATGCTTGGATTAACTGTTTGTGTTTGCATGATATTGATACTCAAAAAGCAAGGGTTAGCAAGAATAATTGATAGGAATCATTTCAAACATAAGCTGAGAAAGGAAGACAATGATTTGTCAACGTTTGATTTCGCAATCATAGCGAGAGCCACTGGAAACTTTGCAAAGAGTAACAAACTGGGAGAAGGTGGCTTTGGACCTGTATATAAGGCAAGACTGTTGGATGGGCAAGAGTTTGCCGTTAAAAGGCTTTCAAATAAATCAGGACAAGGGTTGGAGGAGTTCAAAAATGAAGTTATGTTGATTGCCAAACTTCAACACCGTAATCTTGTCAAGCTCATTGGTTGCAGCATTGAAGGAAAAGAAAGAATGTTGATCTATGAGTACATGCCAAACAAAAGCTTGGATTACTTTATTTTTGATGAAACTAGAAGGACAATGGTAGATTGGCCTAAGCATTTCAACATTATCTGTGGCATTGCTCGAGGAATTCTTTATCTTCATCAAGACTCTAGATTGAGGATTGTTCATAGAGATCTGAAAACCAGCAACATTTTACTAGATGGTAATTTCGATCCTAAAATATCGGACTTTGGCTTAGCTAGAACATTCTGGGGAGATCAAGTTGAGGCAAACACAAATAGGCTGGCTGGAACATATGGTTACATGGCTCCTGAGTATGCTGCTCGTGGGCAGTTTTCAATGAAATCAGATGTCTTTAGTTATGGTGTGATAGTGTTAGAGATTGTAAGTGGCAAGAAGAACAGAGAATTTTCAGACCCAAAACACTACCTTAATCTTCTTGGACATACATGGAGATTGTGGGCTGAAGAGAGGGCATTGGAACTACTGGATGGAGTGTTAAAGGAAAGATTCACACCTTCTGAAGTCATACGATGTATACAAGTAGGCCTGTTATGCGTGCAACAAAGACCAGAGGATAGGCCAGACATGTCATCAGTTGTTCTAATGCTTAATGGCGAGAAATTATTGCCCAACCCAAAGGTTCCGGGTTTTTACACAGAAGGAGATGTTAAACCTGAATCAGATTTTTCACCCACAAATCGCTTCTCAACTAATCAAATTTCAATCACAATGTTAGAAGCAAGATAG 2451 0.3925 MVDNFRMLFIWFLLFSYLRNSTSLDSLAPSQSIRDSERLVSKEGTFEAGFFSPGTSTRRYLGIWYRDVSPLTVVWVANREKPVYNKSGVLKLEERGVLMILNSTNSTIWRSNNISSTVKNPIAQLLDSGNLVVRNERDINEDNFLWQSFDYPCDTFLPGMKLGWNLVTGQDRFLSSWKSEDDPAKGDYSLKLDLRGYPEFFGYEGDAIKFRGGSWNGEALVGYPIHQLVQQLVYEFVFNKKDVYYEYKILDRSIIYIFTLTPSGFGQRFLWTNQTSSKKVLSGGADPCENYAICGANSICNMNGNAQTCDCIKGYVPKFPGQWNVSYWSNGCVPRNKSDCKTSNTDGLLRYTDMKIPDTSSSWFNKTMNLEECQKSCLKNCSCKACANLDIRNGGSGCLLWFDDLVDMRQFSKGGQDLYFRAPASELVNSHGKNLKKLLGITIGAIMLGLTVCVCMILILKKQGLARIIDRNHFKHKLRKEDNDLSTFDFAIIARATGNFAKSNKLGEGGFGPVYKARLLDGQEFAVKRLSNKSGQGLEEFKNEVMLIAKLQHRNLVKLIGCSIEGKERMLIYEYMPNKSLDYFIFDETRRTMVDWPKHFNIICGIARGILYLHQDSRLRIVHRDLKTSNILLDGNFDPKISDFGLARTFWGDQVEANTNRLAGTYGYMAPEYAARGQFSMKSDVFSYGVIVLEIVSGKKNREFSDPKHYLNLLGHTWRLWAEERALELLDGVLKERFTPSEVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNGEKLLPNPKVPGFYTEGDVKPESDFSPTNRFSTNQISITMLEAR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1209 816 Gene3D Phosphorylase Kinase; domain 1 463 575 - -
Gso12g1209 816 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1209 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 814 - -
Gso12g1209 816 CDD B_lectin 30 152 IPR001480 -
Gso12g1209 816 Pfam PAN-like domain 340 408 IPR003609 -
Gso12g1209 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Gso12g1209 816 ProSiteProfiles PAN/Apple domain profile. 340 424 IPR003609 -
Gso12g1209 816 Gene3D Transferase(Phosphotransferase) domain 1 576 777 - -
Gso12g1209 816 SMART serkin_6 500 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1209 816 SMART ntp_6 343 422 IPR003609 -
Gso12g1209 816 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Gso12g1209 816 PIRSF SRK 1 816 IPR024171 GO:0004674
Gso12g1209 816 Pfam Protein tyrosine and serine/threonine kinase 503 769 IPR001245 GO:0004672|GO:0006468
Gso12g1209 816 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 19 814 - -
Gso12g1209 816 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Gso12g1209 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Gso12g1209 816 Pfam D-mannose binding lectin 72 178 IPR001480 -
Gso12g1209 816 Gene3D - 19 149 IPR036426 -
Gso12g1209 816 CDD STKc_IRAK 506 773 - -
Gso12g1209 816 CDD PAN_AP_plant 337 421 - -
Gso12g1209 816 SMART blect_4 30 152 IPR001480 -
Gso12g1209 816 Gene3D Hepatocyte Growth Factor 339 421 - -
Gso12g1209 816 SUPERFAMILY Protein kinase-like (PK-like) 486 771 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1209 Gso-Chr12 20252489 20316894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1209 440 786 Receptor kinase-like Gene Family AT4G23190 51.404 1.21e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1209 PK_Tyr_Ser-Thr 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1209 - - gmx:100790261 1650.18