Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1208 ATGGTGGACAACTTCAGAATGTTATTTATTTGGTTGTTCATACTATTATCCTACTTGAAAAACTCCACTTCAATGGACAGTTTATCTCCAAGTCAATCTATCCGAGATGGGGAGACATTAGTTTCAGATGAAGAAACATTTGAAGTGGGTTTCTTTAGCCCTGGAACTTCAACAAGACGATACTTGGGGATATGGTACAGGAATGTATCTCCTTTAACAGTGGTCTGGGTGGCTAACCGAGAAAATGCCCTTCAAAATAAGTTAGGAGTTATGAAACTGGATGAAAACGGGGTTATTGTGATTCTCAGCGGTAACAACAGCAAAATTTGGTGGTCCAGCAGTACATCAAGCAAAGTAGTAAAGAATCCAATTGCACAGCTCTTGGACTATGGAAATCTCGTGGTTAGAGATGAACGGGATATAAATGAGGACAAATTTTTGTGGCAGAGTTTTGATAATCCATGTGATAAATTTTTGCCAGGAATGAAAATTGGATGGAACTTAGTAACTGGTCTAGATAGAATAATATCATCTTGGAAAAATGAAGATGATCCTGCTAAGGGAGAATATTCTTTCAAACTTGATCTTAAAGGATATCCACAACTTTTTGGATACAAGGGGAATGTAATAAGATTTAGAGTAGGCTCATGGAATGGACAGGCTTTGGTGGGTTATCCAATTCGTCCAGTCACACAATATGTACATGAATTAGTGTTTAATGAAAAAGAAGTGTATTACGAGTATAAAATCCTTGATAGATCGATTTTCTTCATAGTTACATTGAACTCTTCAGGGATTGGGAATGTCCTCCTATGGACAAATCAGACAAGAAGAATAAAAGTTATCTCACTTCGGTCAGATCTGTGTGAAAATTATGCTATGTGTGGCATAAATTCTACATGTAGTATGGATGGTAACTCTCAGACATGTGATTGCATCAAGGGGTATGTTCCAAAGTTCCCTGAACAATGGAATGTGTCAAAATGGTATAATGGCTGCGTTCCAAGGAATAAACCTGATTGTACAAACATCAACATAGATGGCTTGTTGAGGTACACAGACTTGAAATTGCCAGACACATCTTCATCATGGTTCAATACGACCATGAGCCTTGAGGAATGCAAGAAGTCTTGTCTGAAAAACTTTTCTTGTAAAGCATATGCAAATTTGGATATTCGCAATGGAGGAAGTGGCTGCTTACTCTGGTTTGATGATCTGATTGATACGAGAAAATTCTCTATAGGGGGACAAGACATTTATTTCAGAATTCAGGCATCATCATTGCTAGATCATGTTGCCGTCAATGGCCATGGAAAAAACACGAGAAGGATGATAGGAATAACAGTTGGTGCAAATATACTTGGATTAACTGCATGTGTTTGCATAATAATCATTATCAAAAAGCTAGGGGCAGCAAAAATAATTTATAGGAACCATTTCAAACGAAAACTGAGAAAGGAAGGCATTGGTTTGTCAACATTTGATTTCCCAATCATAGCTAGAGCCACTGAAAACATCGCCGAGAGTAACAAATTAGGAGAAGGAGGCTTTGGACCTGTATACAAGGGAAGACTGAAGGATGGGCTAGAGTTTGCTGTGAAAAAGCTTTCAAAAAATTCAGCTCAAGGGTTGGAGGAGTTAAAAAATGAAGTTGTGTTGATTGCAAAACTTCAACATCGTAATCTTGTCAAGCTCATAGGTTGCTGCATTGAAGGAAATGAAAGAATGTTGATTTATGAATACATGCCAAACAAAAGTTTGGACTGCTTTATTTTTGATGAAACCAGAAGGCATTTGGTAGATTGGCCTATACGATTCAACATTATCTGTGGCATTGCTCGAGGACTACTTTATCTTCATCAAGACTCTAGATTGAGGATTGTACACAGAGATTTGAAAACCTGCAATATTTTACTAGATGCAAGTTTGGATCCTAAAATATCAGACTTTGGCTTAGCACAAACGTTATGTGGGGATCAAGTTGAGGCGAATACAAATAAGGTGGCTGGAACATATGGTTACATGCCTCCTGTGTATGTTACACGTGGGCATTTCTCAATGAAATCAGATGTCTTTAGTTATGGTGTGGTAGTGTTAGAGATTGTAAGTGGCAAGAGGAATAGAGAATTTTCAGACCCCAAACACTTCCTCAATCTTGTTGGACATGCATGGAGATTGTGGACTGAAGAGAGGGCATTGGAACTACTGGATGGAGTGTTAAGGGAAAGATTCACACCTTCTGAAGTCATACGATGCATACAAGTGGGTCTGTTATGCGTGCAACAAAGACCAAAAGATAGGCCAGACATGTCATCGGTGGTTCTAATGCTTAATGGCGAGAAATTGTTGCCCAACCCAAAGGTTCCTGGTTTTTACACAGAAGGAGATGTGACACCTGAATCAGATATTAAACTTAAGAATTACTTCTCAAGTAATCAAATTTCAATCACAATGTTAGAAGCAAGATAG 2469 0.3823 MVDNFRMLFIWLFILLSYLKNSTSMDSLSPSQSIRDGETLVSDEETFEVGFFSPGTSTRRYLGIWYRNVSPLTVVWVANRENALQNKLGVMKLDENGVIVILSGNNSKIWWSSSTSSKVVKNPIAQLLDYGNLVVRDERDINEDKFLWQSFDNPCDKFLPGMKIGWNLVTGLDRIISSWKNEDDPAKGEYSFKLDLKGYPQLFGYKGNVIRFRVGSWNGQALVGYPIRPVTQYVHELVFNEKEVYYEYKILDRSIFFIVTLNSSGIGNVLLWTNQTRRIKVISLRSDLCENYAMCGINSTCSMDGNSQTCDCIKGYVPKFPEQWNVSKWYNGCVPRNKPDCTNINIDGLLRYTDLKLPDTSSSWFNTTMSLEECKKSCLKNFSCKAYANLDIRNGGSGCLLWFDDLIDTRKFSIGGQDIYFRIQASSLLDHVAVNGHGKNTRRMIGITVGANILGLTACVCIIIIIKKLGAAKIIYRNHFKRKLRKEGIGLSTFDFPIIARATENIAESNKLGEGGFGPVYKGRLKDGLEFAVKKLSKNSAQGLEELKNEVVLIAKLQHRNLVKLIGCCIEGNERMLIYEYMPNKSLDCFIFDETRRHLVDWPIRFNIICGIARGLLYLHQDSRLRIVHRDLKTCNILLDASLDPKISDFGLAQTLCGDQVEANTNKVAGTYGYMPPVYVTRGHFSMKSDVFSYGVVVLEIVSGKRNREFSDPKHFLNLVGHAWRLWTEERALELLDGVLRERFTPSEVIRCIQVGLLCVQQRPKDRPDMSSVVLMLNGEKLLPNPKVPGFYTEGDVTPESDIKLKNYFSSNQISITMLEAR* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1208 822 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Gso12g1208 822 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Gso12g1208 822 SMART serkin_6 506 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1208 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Gso12g1208 822 SMART blect_4 31 154 IPR001480 -
Gso12g1208 822 Gene3D Transferase(Phosphotransferase) domain 1 582 783 - -
Gso12g1208 822 CDD PAN_AP_plant 338 423 - -
Gso12g1208 822 Pfam Protein tyrosine and serine/threonine kinase 509 775 IPR001245 GO:0004672|GO:0006468
Gso12g1208 822 Gene3D Phosphorylase Kinase; domain 1 479 581 - -
Gso12g1208 822 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 820 - -
Gso12g1208 822 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Gso12g1208 822 Pfam PAN-like domain 346 409 IPR003609 -
Gso12g1208 822 SMART ntp_6 344 423 IPR003609 -
Gso12g1208 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Gso12g1208 822 SUPERFAMILY Protein kinase-like (PK-like) 491 777 IPR011009 -
Gso12g1208 822 Pfam D-mannose binding lectin 73 180 IPR001480 -
Gso12g1208 822 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1208 822 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 820 - -
Gso12g1208 822 Gene3D - 20 151 IPR036426 -
Gso12g1208 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Gso12g1208 822 CDD STKc_IRAK 512 779 - -
Gso12g1208 822 Gene3D Hepatocyte Growth Factor 342 425 - -
Gso12g1208 822 CDD B_lectin 31 154 IPR001480 -
Gso12g1208 822 ProSiteProfiles EGF-like domain profile. 285 322 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1208 Gso-Chr12 20084380 20087923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1208 494 794 Receptor kinase-like Gene Family AT4G23140 55.844 5.23e-117 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1208 PK_Tyr_Ser-Thr 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1208 - - gmx:100787059 1650.57