Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1206 ATGGTGCACATCTTCAGAATGTTATTTATATGGTTCTTACTCTTATCATACTTGAGGAACTCCACTTCATCGGACAATTTAGCAGTTAGTCAATATATCAGAGATGGGGAGACATTAGTTTCAGAAGAAGGAACATTTGAAGTGGGTTTCTTTAGCCCTGGAGCTTCAACAGGACGATACTTGGGGATATGGTACAGAAATCTATCTCCATTAACAGTGGTCTGGGTGGCTAACCGAGAAAATGCACTTCAAAATAAGTCAGGAGTTTTAAAGCTTGATGAAAAGGGTGTTCTTGTGATTCTCAATGGCACCAACAATACAATTTGGTGGTCAAACAACACATCAAGCAAAGCAGCAAAGAATCCTATTGCACAGATCTTAGACTCTGGAAATATTGTGGTGAGAAATGAACGGGATATAAACGAGGACAACTTTTTTTGGCAGAGTTTTGATTATCCGTGTGACACATTTTTGCCAGGAATGAAAATTGGATGGAAAACTGGTCTAGATAGAACTCTATCATCTTGGAAAAATGAAGATGATCCTGCTAAGGGAGAATATTCGATGAAACTTGATCTTAGAGGATATCCACAATTTTTTGGATACAAGGGAGATGTAATAACATTTAGAGGAGGCTCATGGAACGGACAGGCTTTGGTGGGTTATCCAATTCGTCCACCCACACAACAATATGTATATGATTTTGTGTTTAATGAAAAGGAAGTGTATGTTGAGTATAAGACCCCTGATAGATCGATTTTCATCATAATTACATTGACCCCTTCAGGGTCTGGGTTTGGAAACGTTCTCCTATGGACAAAGCAAACACGGAATATAGAAGTTCTGAGGCTTGGTGAGTCAGATCAGTGTGAAAATTATGCTATATGTGGTGCAAATTCTATTTGTAATATGGATGGTAACTCTCAGACATGTGATTGCATCAAAGGATATGTTCCAAAGTTCCCTGAACAAAGGAATGTATCATATTTGCATAATGGCTGTGTTCCTAGGAATAAATTTGATTGTAAAAGCAGCAACACTGATGGCTTCTTGAGATACACGGACTTGAAATTGCCAGATACATCTTCATCATGGTTAAATAAGACCATGAACCTTGACGAATGTCAGAAGTCTTGTCTGAAAAATTGTTCTTGTAAAGCATATGCAAATGCGGATATTCGTAACGGAGGAAGTGGCTGTTTACTTTGGTTTGATGATCTGATTGACATGAGAAAATTCTCTTTAGGTGGACAAGACATTTATTTCAGAGTCCCTGCTTCAGAGCTAGATCATGTTGCAGTCAATGGCCATGGAAAAAACATGAAAAAGATGTTAGGAATCACAGTTGGTACGATTATTCTTGGATTAACTGCATGTGCTTGCATAATAATGATACTCAAAATGCAAGGAAGAATAATTTATAGGAAGCATTTCAAACATAAACTGAGAAAGGAAGGCATTGATTTGTCAACATTTGATTTTCTAATCATAGCAAGAGCCACTGAAAACTTCGCAGAGAGTAACAAATTGGGAGAAGGTGGCTTTGGACCTGTGTACAAGGGAAGACTGAAGGATGGGCAAGAGTTTGCTGTGAAAAGGCTTTCAAAGAAGTCAGGTCAAGGGTTGGAGGAGTTCAAAAATGAAGTTGTGTTGATTGCCAAACTTCAACACCGTAATCTTGTCAAGCTCATAGGTTGCTGCATTGAAGGAAATGAAAGAATGTTGATCTATGAATACATGCCAAATAAAAGCTTAGACAACTTTATTTTTCATGAAACTCAAAGGAATTTGGTAGATTGGCCTAAGCGATTCAACATTATTTGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGATTGAGGATTGTACATAGAGATTTGAAAACCAGCAATATTTTACTGGATGCAAATTTAGATCCTAAAATATCAGATTTTGGCTTAGCTCGAACATTATGGGGAGATCAAGTCGAGGCAAACACGAATAGGGTGGCTGGAACATATGGTTACATGCCTCCTGAGTATGCTGCTCGTGGGCATTTCTCAATGAAATCCGATGTCTTTAGTTATGGGGTGATACTGTTAGAGATTGTAAGTGGCCAAAGGAACAGAGAATTTTCAGACCCAAAACACAACCTTAATCTTCTTGGATATGCATGGAGATTGTGGACTGAAGAGAGGGCATTGGAACTACTGGAAGGAGTGCTAAGGGAAAGACTCACACCTTCTGAAGTCATACGATGTATACAGGTGGGTTTGTTATGCGTGCAACAAAGACCCGAAGATAGGCCAGATATGTCATCAGTGGTTCTAATGCTGAATGGTGAAAAATTATTGCCCAACCCTAACGTTCCAGGTTTCTACACAGAAAGAGCCGTTACCCCTGAATCAGATATTAAACCCTCTAGTAATCAACTTTCAATCACATTGTTAGAAGCAAGATAG 2451 0.3872 MVHIFRMLFIWFLLLSYLRNSTSSDNLAVSQYIRDGETLVSEEGTFEVGFFSPGASTGRYLGIWYRNLSPLTVVWVANRENALQNKSGVLKLDEKGVLVILNGTNNTIWWSNNTSSKAAKNPIAQILDSGNIVVRNERDINEDNFFWQSFDYPCDTFLPGMKIGWKTGLDRTLSSWKNEDDPAKGEYSMKLDLRGYPQFFGYKGDVITFRGGSWNGQALVGYPIRPPTQQYVYDFVFNEKEVYVEYKTPDRSIFIIITLTPSGSGFGNVLLWTKQTRNIEVLRLGESDQCENYAICGANSICNMDGNSQTCDCIKGYVPKFPEQRNVSYLHNGCVPRNKFDCKSSNTDGFLRYTDLKLPDTSSSWLNKTMNLDECQKSCLKNCSCKAYANADIRNGGSGCLLWFDDLIDMRKFSLGGQDIYFRVPASELDHVAVNGHGKNMKKMLGITVGTIILGLTACACIIMILKMQGRIIYRKHFKHKLRKEGIDLSTFDFLIIARATENFAESNKLGEGGFGPVYKGRLKDGQEFAVKRLSKKSGQGLEEFKNEVVLIAKLQHRNLVKLIGCCIEGNERMLIYEYMPNKSLDNFIFHETQRNLVDWPKRFNIICGIARGLLYLHQDSRLRIVHRDLKTSNILLDANLDPKISDFGLARTLWGDQVEANTNRVAGTYGYMPPEYAARGHFSMKSDVFSYGVILLEIVSGQRNREFSDPKHNLNLLGYAWRLWTEERALELLEGVLRERLTPSEVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNGEKLLPNPNVPGFYTERAVTPESDIKPSSNQLSITLLEAR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1206 816 Pfam PAN-like domain 342 410 IPR003609 -
Gso12g1206 816 Gene3D - 19 150 IPR036426 -
Gso12g1206 816 SMART ntp_6 345 424 IPR003609 -
Gso12g1206 816 SUPERFAMILY Protein kinase-like (PK-like) 490 786 IPR011009 -
Gso12g1206 816 Pfam Protein tyrosine and serine/threonine kinase 507 773 IPR001245 GO:0004672|GO:0006468
Gso12g1206 816 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Gso12g1206 816 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Gso12g1206 816 SMART serkin_6 504 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1206 816 PIRSF SRK 1 816 IPR024171 GO:0004674
Gso12g1206 816 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Gso12g1206 816 CDD B_lectin 30 153 IPR001480 -
Gso12g1206 816 SMART blect_4 30 153 IPR001480 -
Gso12g1206 816 Gene3D Transferase(Phosphotransferase) domain 1 580 781 - -
Gso12g1206 816 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1206 816 Pfam D-mannose binding lectin 72 177 IPR001480 -
Gso12g1206 816 Gene3D Phosphorylase Kinase; domain 1 477 579 - -
Gso12g1206 816 CDD STKc_IRAK 510 777 - -
Gso12g1206 816 CDD PAN_AP_plant 341 425 - -
Gso12g1206 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Gso12g1206 816 Pfam S-locus glycoprotein domain 209 321 IPR000858 GO:0048544
Gso12g1206 816 Gene3D Hepatocyte Growth Factor 341 421 - -
Gso12g1206 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 813 - -
Gso12g1206 816 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 813 - -
Gso12g1206 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1206 Gso-Chr12 20035074 20052712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1206 446 790 Receptor kinase-like Gene Family AT4G23190 50.843 1.41e-120 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1206 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1206 - - gmx:100786515 1647.1