Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1205 ATGTTATTTATTTGGTTCTTCTTATTTTCCTACTTCTCAGGAACTTGCACTTCACTACACAGTTTAGCAGTGAATCAATCCATCCGAGATGGTGAGAATGAGACTTTGGTTTCAGCGGGTGGAATTATTGAAGTGGGTTTCTTTAGCCCAGGAAAATCAACAAGGCGATACTTGGGTATATGGTTCAAAAATGTTAACCCTTTAACAGTGGTGTGGGTGGCTAACCGAAATGCACCACTTGAGAAAAACTCGGGAGTTCTGAAACTCGACGAAAAGGGGATTCTTGTCATTCTGAATCACAAAAACAGCACCATTTGGTCATCCAACATATCAAGCAAAGCCGGGAATAACCCAATTGCTCATCCATTGGATTCAGGAAATTTTGTGGCGAAAAATGGACAGCAACCTGGCAAGGATGCCATATTGTGGCAGAGTTTTGATTATCCGGGTGATACACATACGCCAGGAATCAAGTTTGGGTGGAACTTTCAGATTGGTCTAGAAAGATCTCTATCATCTTGGAAAAGTGTTGACGATCCTGCAGAGGGAGAATATGTTGCAAAAATGGATCTTCGAGGATATCCACAAGTAATTGTGTTCAAGGGATCTGAGATAAAGGTCAGAGTGGGGCCATGGAATGGTCTGTCTTTGGTTGGATATCCGGTTGAAATTCCTTACTGTTCACAAAAATTTGTATTGAATGAAAAAGAGGTGTATTATGAGTACAACCTTCTTGATAGTTTGGACTTCAGCTTATTTAAACTTTCTCCTTCAGGCAGGTCACAGAGAATGTATTGGAGAACTCAAACAAACACGAGGCAAGTCCTCACAGTTGAGGAGAGAGATCAATGCGAAAATTATGGCTTTTGTGGAGAAAATTCTATATGCAATTATGATGGTAGCCGTGCAACTTGTGAATGCCTGAGAGGTTACGTTCCCAAGTCACCAGATCAGTGGAATATGCCAATTTTTCAAAGCGGTTGTGTTCCAGGGAATAAATCAGACTGTAAAAACAGTTATTCAGATGGATTCTTGAAGTATGCACGCATGAAATTGCCAGACACGTCTTCATCATGGTTTAGTAAGACCATGAACCTTGATGAATGTCAGAAGTCATGTCTTAAAAACTGTTCTTGTACAGCATATGCAAATTTAGATATCCGTAATGGAGGGAGTGGCTGTCTACTTTGGTTTAATAATATAGTTGACATGAGGTGTTTCTCGAAATCAGGGCAAGACGTTTATATCAGAGTCCCTGCTTCAGAATTAGATCATGGTGGCCCTGGAAACATCAAGAAAAAGATTCTTGGAATCGCTGTTGGTGTGACTATTTTTGGATTAATCATCACATGTGTCTGCATACTGATAAGCAAAATTCCGACACGAAGATTATATCGTCATTTCCGACAATTTCAATGGAGGCAAGAATATCTTATCTTGAGGAAGGAAGACATGGATTTGTCAACATTTGAGTTGTCAACCATTGCTGAAGCCACTAATAATTTTTCTAGCAGAAATAAACTAGGGGAAGGTGGATTTGGGCCAGTGTACAAGGGTACACTAATAGATGGGCAAGACGTAGCCATAAAACGACACTCACAGATGTCTGATCAAGGACTGGGGGAGTTTAAGAATGAAGTTGTGCTAATTGCAAAACTTCAGCACCGTAATCTTGTGAAACTTCTAGGTTGCTGCGTTCAAGGAGGGGAAAAATTGTTGATCTATGAATACATGTCCAACAAGAGCTTAGACTACTTCATCTTTGATGAAGCTAGAAGTAAGCTCTTAGCCTGGAATCAACGTTTTCACATTATTGGTGGCATCGCACGGGGGCTTCTCTATCTTCACCAAGACTCTAGACTAAGAATTATTCACAGAGATTTGAAAACCAGCAATATCCTACTCGATGCGGATATGAATCCTAAAATCTCAGACTTTGGCTTGGCTCAGAGTTTTGGCTGTGATCAAATTCAAGCCAAAACCAGAAAAGTGGTTGGAACATGTGGTTACATGCCTCCAGAGTATGCTGTGCATGGTCATTACTCTGTGAAATCAGATGTCTTTGGTTTTGGCGTGATTGTACTAGAGATAGTTAGTGGAAGCAAGAACAGGGGATTTTCTGACCCGAAACACTCTCTTAATCTACTTGGACATGCATGGAGACTTTGGACTGAAGACAGGCCATTGGAACTGATAGATATAAACTTACATGAAAGATGCATTCCTTTTGAAGTCTTAAGATGCATACATGTGGGTTTGTTGTGTGTACAACAAAAACCAGGAGATAGGCCGGATATGTCTTCTGTCATTCCTATGCTGAATGGTGAGAAATTATTGCCTCAGCCAAAGGCTCCTGGATTTTATACAGGAAAGTGTACTCCTGAATCAGTATCTTCATCTAAAACTTGCAAATTTTTATCCCAAAATGAGATATCCCAGACAATTTTCGAGGCAAGATAG 2460 0.4033 MLFIWFFLFSYFSGTCTSLHSLAVNQSIRDGENETLVSAGGIIEVGFFSPGKSTRRYLGIWFKNVNPLTVVWVANRNAPLEKNSGVLKLDEKGILVILNHKNSTIWSSNISSKAGNNPIAHPLDSGNFVAKNGQQPGKDAILWQSFDYPGDTHTPGIKFGWNFQIGLERSLSSWKSVDDPAEGEYVAKMDLRGYPQVIVFKGSEIKVRVGPWNGLSLVGYPVEIPYCSQKFVLNEKEVYYEYNLLDSLDFSLFKLSPSGRSQRMYWRTQTNTRQVLTVEERDQCENYGFCGENSICNYDGSRATCECLRGYVPKSPDQWNMPIFQSGCVPGNKSDCKNSYSDGFLKYARMKLPDTSSSWFSKTMNLDECQKSCLKNCSCTAYANLDIRNGGSGCLLWFNNIVDMRCFSKSGQDVYIRVPASELDHGGPGNIKKKILGIAVGVTIFGLIITCVCILISKIPTRRLYRHFRQFQWRQEYLILRKEDMDLSTFELSTIAEATNNFSSRNKLGEGGFGPVYKGTLIDGQDVAIKRHSQMSDQGLGEFKNEVVLIAKLQHRNLVKLLGCCVQGGEKLLIYEYMSNKSLDYFIFDEARSKLLAWNQRFHIIGGIARGLLYLHQDSRLRIIHRDLKTSNILLDADMNPKISDFGLAQSFGCDQIQAKTRKVVGTCGYMPPEYAVHGHYSVKSDVFGFGVIVLEIVSGSKNRGFSDPKHSLNLLGHAWRLWTEDRPLELIDINLHERCIPFEVLRCIHVGLLCVQQKPGDRPDMSSVIPMLNGEKLLPQPKAPGFYTGKCTPESVSSSKTCKFLSQNEISQTIFEAR* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1205 819 CDD STKc_IRAK 508 775 - -
Gso12g1205 819 SMART blect_4 27 149 IPR001480 -
Gso12g1205 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Gso12g1205 819 SMART serkin_6 502 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1205 819 Pfam D-mannose binding lectin 69 175 IPR001480 -
Gso12g1205 819 Gene3D Transferase(Phosphotransferase) domain 1 578 780 - -
Gso12g1205 819 SMART ntp_6 339 418 IPR003609 -
Gso12g1205 819 Pfam PAN-like domain 336 404 IPR003609 -
Gso12g1205 819 CDD PAN_AP_plant 333 419 - -
Gso12g1205 819 Gene3D Hepatocyte Growth Factor 336 416 - -
Gso12g1205 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Gso12g1205 819 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Gso12g1205 819 Pfam Domain of unknown function (DUF3403) 779 819 IPR021820 GO:0004674
Gso12g1205 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 180 IPR036426 -
Gso12g1205 819 Gene3D Phosphorylase Kinase; domain 1 466 577 - -
Gso12g1205 819 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 816 - -
Gso12g1205 819 ProSiteProfiles Bulb-type lectin domain profile. 21 143 IPR001480 -
Gso12g1205 819 Gene3D - 17 146 IPR036426 -
Gso12g1205 819 SUPERFAMILY Protein kinase-like (PK-like) 485 773 IPR011009 -
Gso12g1205 819 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 12 816 - -
Gso12g1205 819 Pfam S-locus glycoprotein domain 208 315 IPR000858 GO:0048544
Gso12g1205 819 Pfam Protein tyrosine and serine/threonine kinase 505 769 IPR001245 GO:0004672|GO:0006468
Gso12g1205 819 CDD B_lectin 31 149 IPR001480 -
Gso12g1205 819 ProSiteProfiles EGF-like domain profile. 280 317 IPR000742 -
Gso12g1205 819 ProSiteProfiles Protein kinase domain profile. 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1205 Gso-Chr12 19970790 19974751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1205 424 788 Receptor kinase-like Gene Family AT4G23190 51.872 5.13e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1205 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1205 - - gmx:100786000 1672.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1205 12 19970790 19974751 Gso11g3019 11 46071653 46076081 PCT