Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1201 ATGACGCATAGCATCATAATGTTATGTATTTGGTTCTTTTTATCTTCCTACATGTTTCAAACTTCCACTTCACTAGACAGTTTAGCAGTGAGTCAATCCATCCGAGATGGCGAGACTTTGGTTTCAGCTGGTGGAATTACTAAAGTGGGTTTCTTTAGCCCGGAAAATTCAACAAGACGATACTTGGGTATATGGTACACAAATTACCCTTCAACAGTGGTATGGGTGGCTAACCGAAATGCACCTCTTGAGAAGAACTCAGGAGTTCTGAAACTCAACAAAAAAGGGATTCTAGAGCTTCTCAATGCAACTAATAGCACTATTTGGTCATCCAACATATCAAGCAAAGCAGTGAATAATCCAATTGCTTATCTTTTGGATTCGGGAAATTTTGTCTTGAAAAATGGACAGCAATCTAACCAGGAGAACATCTTGTGGCAGAGTTTTGATTATCCATGTGATACGTTGATGCCGGGAATGAAACTTGGATGGAACTTAGAGACGGGTCTAGAAAGATCTTTATCCTCTTGGAAAAGTGTTGACGATCCTGCGGAGGGAGAATATACTTTAAAACTTGATCTGGAAGGATATCCTCAAGCAGTTATACACAAGGGACCTGAGATAAAGATCAGAAAGGGGCCATGGAATGGCCAGTCTTGGCCCGGATTTCCAGATCCAACTCTTAAAATATCACAAATATTTGTGTTCAATGAAAAAGAGGTGTCTTATAAATTCAAGCTTCTTGATAAATCCATGTTCAGCATATATACGCTGACCCCTTCTGGCACCGGAGAAAGCTTTTATTGGACAACTGAAACAAGTAACCAACAAGTCTTCTTGACAGGAGGGAAGGATCAATGCGAAAATTATGCCTTTTGTGGTGTAAATTCTATATGCAGTATCGATAATGACGATTCAACCTGTAATTGCATCACAGGATATTCTCCCCAGTTTTCTGAATACTCCTCAATTTCGCCTAATGGTTGTTTCCCAACAATTAAATCTAATTGCAATGACAGTCACTCAGATGACTTCTTGAAGTACAAGCACATGAAATTGCCAGACACATCTTCATCATGGTTTAGTAAGACCATGAATCTTGAGGATTGCAAGAAGTTGTGTCTGGAAAACTGTTCTTGTGTAGCATATGCAAATTTAGACATGCGTGGTGGAGGAAGTGGCTGTCTACTTTGGTTTAGTAATCTGGTTGACATGAGAAAATTCTCTCAATGGGGACAAGACCTTTATGTCAGAGTCCCTGCTTCAAAACTAGGTCATGTTGCAGCTGCCAATGGAAACCTCAAGAAAAAGATAGTGGGAATCACTGTTGGTGTGACTATTTTTGGATTAATCATAACATGTGTATGCATATTGATACTTAAAAATTCAGGGGCTGCAAGAAAAATTTACGGCAAACATTACAAAAACATACAAAGGAAGGAAGACATTGATTTGCCAAATTTCAATTTATCAGTCTTAGCTAAAGCCACTGAAAACTTTTCAACCAAAAACAAGCTTGGAGAAGGTGGCTTTGGACAAGTATATAAGATTGCTTTTCAAGGCACACTTAGAGACGACAAAGAGTTAGTTGTGAAAAGGCTTCCAAAGAAGTCTGGACAAGGGTTGGATGAGTTGAAAACTGAAGTGGTGTTCATTGCCAAACTTCAGCACCGTAATCTAGTAAAGCTTCTTGGTTGCTGCATTGAAGGAGAAGAAAAATTGTTGATTTATGAATACATGGCCAACCAAAGCTTGGACTACTTTATCTTTGATTGGAATAAAACCAAAAGAAAGTTGCTAGATTGGAGTAAGCGTTCCAAGATTATTAGTGGCATTGCTCGAGGACTTCTGTATCTTCATCAAGACTCTAGGCTAAGGATTATTCACAGGGATCTAAAGACTAGTAATATTTTACTAGACACAAATTTTGAACCCAAAATATCAGACTTTGGCGTCGCTCGATCATTTTTGGGAGATCAAGACGAGGCAAACACAAATAGGGTTGTTGGAACATATGGTTACATGCCTCCTAAGTATGCTACTCGTGGACATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTGATAGTACTAGATATTATAAGTGGGAAGAAAAATATGGAAATTTCAAACTCAGATAACTTCAATAATCTTCTTGGACATGCATGGAGATTATGGACAGAAGAGAGAGAACTGGAACTGTTGGATGAAGTGTTAGGAGAACAATGCACGACCTTTGAAGTCATACGATGCATACAAGTAGGTCTCTTATGCGTGCAACAAAGACCAGAAGATAGGCCTGACATGTCATCAGTGGTTTTAATGTTGAATAGTGATAAATTATTGCCAAAGCCAAAGATTCCTGGATTTTATATTGAAAATAATATCACATCTGAAACAGTTAATGAACATGCCGTCACAGCTTAG 2430 0.3848 MTHSIIMLCIWFFLSSYMFQTSTSLDSLAVSQSIRDGETLVSAGGITKVGFFSPENSTRRYLGIWYTNYPSTVVWVANRNAPLEKNSGVLKLNKKGILELLNATNSTIWSSNISSKAVNNPIAYLLDSGNFVLKNGQQSNQENILWQSFDYPCDTLMPGMKLGWNLETGLERSLSSWKSVDDPAEGEYTLKLDLEGYPQAVIHKGPEIKIRKGPWNGQSWPGFPDPTLKISQIFVFNEKEVSYKFKLLDKSMFSIYTLTPSGTGESFYWTTETSNQQVFLTGGKDQCENYAFCGVNSICSIDNDDSTCNCITGYSPQFSEYSSISPNGCFPTIKSNCNDSHSDDFLKYKHMKLPDTSSSWFSKTMNLEDCKKLCLENCSCVAYANLDMRGGGSGCLLWFSNLVDMRKFSQWGQDLYVRVPASKLGHVAAANGNLKKKIVGITVGVTIFGLIITCVCILILKNSGAARKIYGKHYKNIQRKEDIDLPNFNLSVLAKATENFSTKNKLGEGGFGQVYKIAFQGTLRDDKELVVKRLPKKSGQGLDELKTEVVFIAKLQHRNLVKLLGCCIEGEEKLLIYEYMANQSLDYFIFDWNKTKRKLLDWSKRSKIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDTNFEPKISDFGVARSFLGDQDEANTNRVVGTYGYMPPKYATRGHFSVKSDVFSYGVIVLDIISGKKNMEISNSDNFNNLLGHAWRLWTEERELELLDEVLGEQCTTFEVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNSDKLLPKPKIPGFYIENNITSETVNEHAVTA* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1201 809 CDD PAN_AP_plant 334 420 - -
Gso12g1201 809 CDD B_lectin 31 152 IPR001480 -
Gso12g1201 809 SMART blect_4 31 152 IPR001480 -
Gso12g1201 809 SMART serkin_6 500 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1201 809 ProSitePatterns Protein kinases ATP-binding region signature. 506 537 IPR017441 GO:0005524
Gso12g1201 809 ProSiteProfiles Protein kinase domain profile. 500 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1201 809 Pfam S-locus glycoprotein domain 211 317 IPR000858 GO:0048544
Gso12g1201 809 Gene3D Hepatocyte Growth Factor 336 416 - -
Gso12g1201 809 ProSiteProfiles PAN/Apple domain profile. 337 420 IPR003609 -
Gso12g1201 809 Pfam D-mannose binding lectin 72 178 IPR001480 -
Gso12g1201 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Gso12g1201 809 Gene3D - 20 149 IPR036426 -
Gso12g1201 809 SMART ntp_6 340 419 IPR003609 -
Gso12g1201 809 Pfam Protein kinase domain 501 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1201 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Gso12g1201 809 Gene3D Transferase(Phosphotransferase) domain 1 580 784 - -
Gso12g1201 809 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 802 - -
Gso12g1201 809 SUPERFAMILY Protein kinase-like (PK-like) 485 777 IPR011009 -
Gso12g1201 809 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Gso12g1201 809 PIRSF SRK 1 808 IPR024171 GO:0004674
Gso12g1201 809 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 802 - -
Gso12g1201 809 Pfam PAN-like domain 337 405 IPR003609 -
Gso12g1201 809 Gene3D Phosphorylase Kinase; domain 1 462 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1201 Gso-Chr12 19809177 19812818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1201 440 792 Receptor kinase-like Gene Family AT4G23190 50.276 2.00e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1201 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1201 - - gmx:100784066 1156.35