Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1200 ATGTTATTTATTTGGTTCTTCTTATTCTCCTACATGTCTACAACTTGCACTTCACTAGACAGTTTAGCAGTGAGTCAATCTATCCGAGATGGCGAGACTTTGGTTTCAGCAGCTGGAATAATTGAAGCGGGTTTCTTCAGTCCCGGAAGTTCAACAAGACGGTACTTGGGCATATGGTACAGAAATGTATCCCCTTTAACAGTGGTGTGGGTGGCTAACAGAAATATACCTCTTCAGAATAAATCAGGAGTTCTGAAACTCAATGAGAAAGGCATTCTTGAGCTTCTCGATGATACAAACAACCCCATTTGGTCATCCAACATATCAGGCAAAGCAGTCAATAATCCAATTGCTAATCTTTTGGATTCGGGAAATTTTGTAGTGAAAAATGGACAGAAAACTAACAAAGACAGCATCTTGTGGCAGAGTTTTGATTATCCAGGTGACACATTGTTGGAAGGAATGAAACTCGGATGGAACTTGGAGACTGGTCTAGAAAGCACTGTAAGGTCTTGGAAAAGTGTTGATGATCCTGCTGAAGGAGAATATGTTATAAGAATTGATCTTAGAGGGTATCCTCAAATAATTGAATTCAAGGGATCTGATATAAAACTCAGAGCTGGGTCGTGGAATGGCTTGTCAACAGTTAGATATCCAGCTGCAACTCATCTATTGTTACACAAATTCGTGTTCAATGAAAAAGAAGTGTATTATGAGTACGAGATTATCAACAGATCGATCTTCAGTGTATCTACGCTTCCCCCTTCAGGCAATGGGATGAATTTCTATTGGACAACTCAAACAAGCACCCGACAAGTCATCTCAAATGGGGAGAAAGATCTATGTGATATTTATGCCTATTGTGGTGGAAATTCAATATGTAATATTGATGGTAACATTCCAACTTGTGAATGTCTGAGAGGTTATGTTCCCAAGTCTCCTTATCATTGGAATAAATCAATTTGGTCAGATGGTTGTGTTCCAGGGAATAAACCAAATAGCAAAAATAGTGATACAGATGGCTTCTTGATGTACTCACGCATAAAATTGCCAGACACGTCTTCATCGTGGTATAATAAGACCATGAACCTTGATGAATGTCAGAAGTCATGTCTTAAAAACGGTTCTTGTGCAGCATATGCAAATTTAGACATCCGTGACGGAGGAAGTGGCTGTCTACTTTGGTTTAATACTCTTGTTGACTTAGGGAGATTCTCTCAATGGGGACAAGACTTTTATATCAGAGTGCCTGCTTCAGAATTAGATCATGTTGACCATGGAAACTTCAAGAAAAGGAAAGTAGAAATCATTGTTGGTGTGACCATTGCTGGATTAATCATCACATGTGTATGCATATTGATAATTAAAAATTCAGGGGCTGCAAGAAAATTTTACAACAAGCATTGCAAAAACATACAAAGAATGGAAGACATGGATTTGCCATCTTTTGATTTTTCAATTTTAGCTAATGCTACAGAAAACTTTTCAACTGAAAACAAGCTTGGACAAGGTGGCTTTGGACCGGTATACAAGGGCACAATGATAGATGGGAAAGAGATAGCAGTGAAAAGGCTTTCAAAGAAGTCAGGACAGGGGTTGGATGAGTTCAAAAATGAAGTGGCATTGATTGCCAAATTACAACACCGTAATCTTGTAAAGCTTCTTGGTTGCTGCATTAAAGGAGAAGAAAAACTGTTGATTTACGAGTACATGCCCAACCACAGCTTGGACTACTTTGTTTTTGAGGAAACCAAAAGGAAATTTCTGGATTGGCACAAGTGTTTCAACATTATTAGCGGCATTGCTCGAGGTCTTCTGTATCTTCATCAAGACTCTAGGCTGAGGATTATTCACAGAGATCTAAAAACTAGCAATATTTTACTAGATGCAAATTTGGATCCAAAAATATCAGACTTTGGATTGGCTCGATCATTCTTGGGAGATCAAGTTGAGGAAAACACAAATCGGGTGGCTGGAACATATGGTTACATGCCTCCGGAGTATGCTACACGTGGGAATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTGATTGTACTAGAGATTGTTAGTGGGAAAAGAAACAGGGACTTTGCAGACTCAAAACACTACAATAATCTTCTTGGACATGCGTGGACATTGTGGACTGAAGAAAGGGCACTGGAACTATTGGATGAAGTGTTAGGAGTTCAATGCACGCCCTCTGAAGTCATAAGATGTATACAAGTAGGCCTATTATGCGTGCAGAAAATACCCGAAGATAGGCTAGACATGTCATCAGTGGTTTTAATGTTAAATGGTGATAAATTATTGCCAAAGCCAAACGCTCCTGGATTTTATGCTGAAAAAGATGTTTTATCTGAAGCAAGTTCATCCTTGACAAATCACCAACTTTGTTCAGTTAATGAACTTTCCATCACAATGTTAGACGCAAGATAG 2442 0.3882 MLFIWFFLFSYMSTTCTSLDSLAVSQSIRDGETLVSAAGIIEAGFFSPGSSTRRYLGIWYRNVSPLTVVWVANRNIPLQNKSGVLKLNEKGILELLDDTNNPIWSSNISGKAVNNPIANLLDSGNFVVKNGQKTNKDSILWQSFDYPGDTLLEGMKLGWNLETGLESTVRSWKSVDDPAEGEYVIRIDLRGYPQIIEFKGSDIKLRAGSWNGLSTVRYPAATHLLLHKFVFNEKEVYYEYEIINRSIFSVSTLPPSGNGMNFYWTTQTSTRQVISNGEKDLCDIYAYCGGNSICNIDGNIPTCECLRGYVPKSPYHWNKSIWSDGCVPGNKPNSKNSDTDGFLMYSRIKLPDTSSSWYNKTMNLDECQKSCLKNGSCAAYANLDIRDGGSGCLLWFNTLVDLGRFSQWGQDFYIRVPASELDHVDHGNFKKRKVEIIVGVTIAGLIITCVCILIIKNSGAARKFYNKHCKNIQRMEDMDLPSFDFSILANATENFSTENKLGQGGFGPVYKGTMIDGKEIAVKRLSKKSGQGLDEFKNEVALIAKLQHRNLVKLLGCCIKGEEKLLIYEYMPNHSLDYFVFEETKRKFLDWHKCFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLDPKISDFGLARSFLGDQVEENTNRVAGTYGYMPPEYATRGNFSVKSDVFSYGVIVLEIVSGKRNRDFADSKHYNNLLGHAWTLWTEERALELLDEVLGVQCTPSEVIRCIQVGLLCVQKIPEDRLDMSSVVLMLNGDKLLPKPNAPGFYAEKDVLSEASSSLTNHQLCSVNELSITMLDAR* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1200 813 SMART serkin_6 495 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1200 813 Pfam S-locus glycoprotein domain 206 313 IPR000858 GO:0048544
Gso12g1200 813 Pfam PAN-like domain 337 402 IPR003609 -
Gso12g1200 813 Gene3D Phosphorylase Kinase; domain 1 468 570 - -
Gso12g1200 813 Gene3D Hepatocyte Growth Factor 333 412 - -
Gso12g1200 813 SUPERFAMILY Protein kinase-like (PK-like) 480 772 IPR011009 -
Gso12g1200 813 Gene3D - 13 144 IPR036426 -
Gso12g1200 813 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 14 811 - -
Gso12g1200 813 CDD PAN_AP_plant 334 417 - -
Gso12g1200 813 CDD STKc_IRAK 501 768 - -
Gso12g1200 813 SMART ntp_6 337 416 IPR003609 -
Gso12g1200 813 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 811 - -
Gso12g1200 813 Pfam Protein tyrosine and serine/threonine kinase 497 763 IPR001245 GO:0004672|GO:0006468
Gso12g1200 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Gso12g1200 813 Pfam D-mannose binding lectin 67 173 IPR001480 -
Gso12g1200 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 178 IPR036426 -
Gso12g1200 813 Pfam Domain of unknown function (DUF3403) 772 813 IPR021820 GO:0004674
Gso12g1200 813 Gene3D Transferase(Phosphotransferase) domain 1 571 772 - -
Gso12g1200 813 CDD B_lectin 25 147 IPR001480 -
Gso12g1200 813 SMART blect_4 25 147 IPR001480 -
Gso12g1200 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Gso12g1200 813 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1200 813 ProSiteProfiles Bulb-type lectin domain profile. 19 141 IPR001480 -
Gso12g1200 813 ProSiteProfiles PAN/Apple domain profile. 326 417 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1200 Gso-Chr12 19787546 19791262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1200 475 813 Receptor kinase-like Gene Family AT4G23140 54.286 2.20e-123 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1200 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1200 - - gmx:100784066 1272.3