Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1194 ATGCAGAAACTAGAGGAAGTTGGAAGCTCTGTCAAGGCTCGGATAAAGAAGATAATGCAAGCTGATGAGGATGTTGGAAAGATAGCACTCGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTTTTATTGCTTACGATTTGGAATAGTGACAAGTAA 237 0.3797 MQKLEEVGSSVKARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHFLLLTIWNSDK* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1194 78 PANTHER CCAAT TRANSCRIPTION FACTOR 13 68 - -
Gso12g1194 78 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 13 68 - -
Gso12g1194 78 SUPERFAMILY Histone-fold 12 68 IPR009072 GO:0046982
Gso12g1194 78 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 12 68 IPR003958 -
Gso12g1194 78 Gene3D Histone, subunit A 11 69 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1194 Gso-Chr12 19696346 19701357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1194 13 68 CCAAT-HAP5 Transcription Factor Family AT3G12480 91.071 2.36e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso12g1194 CBFD_NFYB_HMF 3.4e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1194 K21752 - cit:102616753 108.997