Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1192 ATGACGCATAGCATCATAATGTTATGTATTTGGTTCTTTTTATCTTCCTACATGTTTCAAACTTCCACTTCACTAGACAGTTTAGCAGTGAGTCAATCCATCCGAGATGGCGAGACTTTGGTTTCAGCTGGTGGAATTACTAAAGTGGGTTTCTTTAGCCCGGAAAATTCAACAAGACGATACTTGGGTATATGGTACACAAATTACCCTTCAACAGTGGTATGGGTGGCTAACCGAAATGCACCTCTTGAGAAGAACTCAGGAGTTCTGAAACTCAACAAAAAAGGGATTCTAGAGCTTCTCAATGCAACTAATAGCACTATTTGGTCATCCAACATATCAAGCAAAGCAGTGAATAATCCAATTGCTTATCTTTTGGATTCGGGAAATTTTGTCTTGAAAAATGGACAGCAATCTAACCAGGAGAACATCTTGTGGCAGAGTTTTGATTATCCATGTGATACGTTGATGCCGGGAATGAAACTTGGATGGAACTTAGAGACGGGTCTAGAAAGATCTTTATCCTCTTGGAAAAGTGTTGACGATCCTGCGGAGGGAGAATATACTTTAAAACTTGATCTGGAAGGATATCCTCAAGCAGTTATACACAAGGGACCTGAGATAAAGATCAGAAAGGGGCCATGGAATGGCCAGTCTTGGCCCGGATTTCCAGATCCAACTCTTAAAATATCACAAATATTTGTGTTCAATGAAAAAGAGGTGTCTTATAAATTCAAGCTTCTTGATAAATCCATGTTCAGCATATATACGCTGACCCCTTCTGGCACCGGAGAAAGCTTTTATTGGACAACTGAAACAAGTAACCAACAAGTCTTCTTGACAGGAGGGAAGGATCAATGCGAAAATTATGCCTTTTGTGGTGTAAATTCTATATGCAGTATCGATAATGACGATTCAACCTGTAATTGCATCACAGGATATTCTCCCCAGTTTTCTGAATACTCCTCAATTTCGCCTAATGGTTGTTTCCCAACAATTAAATCTAATTGCAATGACAGTCACTCAGATGACTTCTTGAAGTACAAGCACATGAAATTGCCAGACACATCTTCATCATGGTTTAGTAAGACCATGAATCTTGAGGATTGCAAGAAGTTGTGTCTGGAAAACTGTTCTTGTGTAGCATATGCAAATTTAGACATGCGTGGTGGAGGAAGTGGCTGTCTACTTTGGTTTAGTAATCTGGTTGACATGAGAAAATTCTCTCAATGGGGACAAGACCTTTATGTCAGAGTCCCTGCTTCAAAACTAGGTCATGTTGCAGCTGCCAATGGAAACCTCAAGAAAAAGATAGTGGGAATCACTGTTGGTGTGACTATTTTTGGATTAATCATAACATGTGTATGCATATTGATACTTAAAAATTCAGGGGCTGCAAGAAAAATTTACGGCAAACATTACAAAAACATACAAAGGAAGGAAGACATTGATTTGCCAAATTTCAATTTATCAGTCTTAGCTAAAGCCACTGAAAACTTTTCAACCAAAAACAAGCTTGGAGAAGGTGGCTTTGGACAAGTATACAAGGGCACACTGAGAGACGGCAAAGAGTTAGCTGTGAAAAGGCTTTCAAAGAAGTCTGGACAAGGGTTGGATGAGTTGAAAACTGAAGTGGTGTTCATTGCCAAACTTCAGCACCGTAATCTAGTAAAGCTTCTTGGTTGCTGCATTGAAGGAGAAGAAAAATTGTTGATTTATGAATACATGGCCAACCAAAGCTTGGATTACTTTATCTTTGATAAAACCAAAAGAATGTTGCTAGATTGGAGTAAGCGTTCCAAGATTATTAGTGGCATTGCTCGAGGACTTCTGTATCTTCATCAAGACTCTAGGCTAAGGATTATTCACAGGGATCTAAAGACTAGTAATATTTTACTAGACACAAATTTTGAACCCAAAATATCAGACTTTGGCGTCGCTCGATCATTTTTGGGAGATCAAGACGAGGCAAACACAAATACGATTGTTGGAACATACGGTTACATGCCTCCTGAGTATGCTGCTCGTGGACATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTCATAGTACTAGAGATTATAAGTGGGAAGAAAAATAGGGAATTTTCAAACTCAGATAACTTCAATAATCTTCCTGGACATGCATGGAGATTATGGACAGAAGAGAGAGAACTGGAACTGTTGGATGAAGTGTTAGGAGAACAATGCACGACCTTTGAAGTCATACGATGCATACAGGTAGGTCTCTTATGCGTGCAACAAAGACCAGAAGATAGGCCTGGCATGTCATCAGTGGTTTTAATGTTGAATGGTGATAAATTATTGCCAAAGCCAAAGATTCCTGGATTTTATATTGAAAATAATATCACATCTGAAACAGTTAATGAACATGCCGTCACAGCTTAG 2412 0.3897 MTHSIIMLCIWFFLSSYMFQTSTSLDSLAVSQSIRDGETLVSAGGITKVGFFSPENSTRRYLGIWYTNYPSTVVWVANRNAPLEKNSGVLKLNKKGILELLNATNSTIWSSNISSKAVNNPIAYLLDSGNFVLKNGQQSNQENILWQSFDYPCDTLMPGMKLGWNLETGLERSLSSWKSVDDPAEGEYTLKLDLEGYPQAVIHKGPEIKIRKGPWNGQSWPGFPDPTLKISQIFVFNEKEVSYKFKLLDKSMFSIYTLTPSGTGESFYWTTETSNQQVFLTGGKDQCENYAFCGVNSICSIDNDDSTCNCITGYSPQFSEYSSISPNGCFPTIKSNCNDSHSDDFLKYKHMKLPDTSSSWFSKTMNLEDCKKLCLENCSCVAYANLDMRGGGSGCLLWFSNLVDMRKFSQWGQDLYVRVPASKLGHVAAANGNLKKKIVGITVGVTIFGLIITCVCILILKNSGAARKIYGKHYKNIQRKEDIDLPNFNLSVLAKATENFSTKNKLGEGGFGQVYKGTLRDGKELAVKRLSKKSGQGLDELKTEVVFIAKLQHRNLVKLLGCCIEGEEKLLIYEYMANQSLDYFIFDKTKRMLLDWSKRSKIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDTNFEPKISDFGVARSFLGDQDEANTNTIVGTYGYMPPEYAARGHFSVKSDVFSYGVIVLEIISGKKNREFSNSDNFNNLPGHAWRLWTEERELELLDEVLGEQCTTFEVIRCIQVGLLCVQQRPEDRPGMSSVVLMLNGDKLLPKPKIPGFYIENNITSETVNEHAVTA* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1192 803 CDD PAN_AP_plant 334 420 - -
Gso12g1192 803 CDD B_lectin 31 152 IPR001480 -
Gso12g1192 803 SMART blect_4 31 152 IPR001480 -
Gso12g1192 803 Pfam PAN-like domain 337 405 IPR003609 -
Gso12g1192 803 PIRSF SRK 1 802 IPR024171 GO:0004674
Gso12g1192 803 Gene3D Hepatocyte Growth Factor 336 416 - -
Gso12g1192 803 ProSiteProfiles PAN/Apple domain profile. 337 420 IPR003609 -
Gso12g1192 803 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1192 803 SUPERFAMILY Protein kinase-like (PK-like) 485 771 IPR011009 -
Gso12g1192 803 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1192 803 Pfam D-mannose binding lectin 72 178 IPR001480 -
Gso12g1192 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Gso12g1192 803 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Gso12g1192 803 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 796 - -
Gso12g1192 803 SMART ntp_6 340 419 IPR003609 -
Gso12g1192 803 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 796 - -
Gso12g1192 803 Gene3D - 20 149 IPR036426 -
Gso12g1192 803 Pfam S-locus glycoprotein domain 211 317 IPR000858 GO:0048544
Gso12g1192 803 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Gso12g1192 803 Gene3D Phosphorylase Kinase; domain 1 462 575 - -
Gso12g1192 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Gso12g1192 803 Gene3D Transferase(Phosphotransferase) domain 1 576 777 - -
Gso12g1192 803 CDD STKc_IRAK 506 773 - -
Gso12g1192 803 Pfam Protein kinase domain 501 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1192 Gso-Chr12 19686513 19690223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1192 492 788 Receptor kinase-like Gene Family AT4G23140 59.211 1.21e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1192 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1192 - - gmx:100784066 1176.39