Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1189 ATGTTATGTATTTGGTTCTTCTTATTTTCCTACTTCTCAGGAACTTGCACTTCACTACACAGTTTAGCAGTGAATCAATCCATCCGAGATGCTGAGAACGAGACTTTGGTTTCAGCGGGTGGAATTATTGAAGTGGGATTCTTTAGCCCAGGAAAATCAACAAGGCGATACTTGGGTATATGGTTCAAAAATGTTAACCCTTTAAAAGTGGTGTGGGTGGCTAACCGAAATGCACCACTTGAGAAAAACTCAGGAGTTCTGAAACTCGACGAAAAGGGGATTCTTGTCCTTCTGAATCACAAAAACAGCACCATTTGGTCATCCAACATATCAAGCAAAGCCGGGAATAACCCAATTGCTCATCCATTGGATTCTGGAAATTTTGTGGTGAAAAATGGACAGCAACCAGGCAAGGATGCCATATTGTGGCAGAGTTTTGATTATCCAGGTGATACACATACGCCAGGAATGAAGTTTGGGTGGAGCTTTGGTCTAGAAAGATCTATATCATCTTGGAAAAGTGTTGACGATCCTGCGGAGGGAGAATATGTTGTAAAAATGGATCTTCGAGGATATCCACAAGTAATTATGTTCAAGGGATCTGAGATAAAGGTCAGAGTAGGACCATGGAATGGTCTGTCTTTGGTTGGATATCCGGTTGAAATTCCTTACTGTTCACAAAAATTTGTATATAATGAAAAAGAGGTGTATTATGAGTACAACCTTCTTCATAGTTTGGACTTCAGCTTATTGAAACTTTCTCCATCAGGCAGGGCACAGAGAATGTATTGGAGAACTCAAACAAGCACCAGGCAAGTCCTAACAATTGAGGAGATAGATCAATGCGAATATTATGACTTTTGTGGTGAAAATTCTATATGCAATTATGATGGTAACCGTCCAACTTGTGAATGCCTGAGAGGTTATGTTCCCAAGTCTCCAGATCAGTGGAATATGCCAATTTTTCAAAGCGGTTGTGCTCCAAGGAATAAATCAGATTGCAAAAACAGTTATACAGATGGATTCTTGAAGTATGCACGCATGAAATTGCCAGACACGTCTTCATCATGGTTTAGTAAGACCATGAACCTTAATGAATGTCAGAAGTCATGTCTTAAAAACTGTTCTTGTACAGCATATGCAAATTTAGATATCCGTAATGGAGGAAGTGGTTGTCTACTATGGTTTAATAATATAGTTGACATGAGATATTTCTCGAAATCAGGGCAAGACGTTTATATCAGAGTCCCTGCTTCAGAATTAGATCATGCTGGCCCTGGAAACATCAAGAAAAAGATTCTAGGAATTGCTGTTGGTGTGACTATTTTTGGATTAATCATCACATGTGTCTGCATACTGATAAGCAAAAATCCGATGGCACGAAGATTATATTGTCATATCCCACGATTTCAATGGAGGCAAGAATATCTTATCTTGAGGAAGGAAGATATGGATCTGTCAACATTTGAGTTGTCAACAATTGCTAAAGCCACTAATAATTTTTCCATCAGAAATAAACTAGGGGAAGGTGGATTTGGGCCAGTGTACAAGGGTACACTAATAGATGGGCAAGAGGTAGCCATAAAACGACACTCACAGATGTCTGATCAAGGACCAGGGGAGTTTAAGAATGAAGTTGTGCTAATTGCAAAACTTCAGCACCGTAATCTTGTGAAACTTCTAGGTTGCTGCGTTCAAGGAGGGGAAAAATTGTTGATCTATGAATACATGCCCAACAAGAGCTTAGACTACTTCATCTTTGACAAAGCTAGAAGTAAGATCTTAGCCTGGAATCAACGTTTCCACATTATTGGTGGCATCGCTAGGGGGCTTCTCTATCTTCACCAAGACTCCAGACTGAGAATTATTCACAGAGATTTGAAAACGAGCAATATCCTGCTTGATGCGAATATGAATCCTAAAATCTCAGACTTTGGTCTGGCTCGGACTTTTGGCTGTGAACAAATTCAAGCCAAAACCAGAAAAGTGGTTGGAACATATGGTTACATGCCTCCAGAGTACGCTGTGCATGGTCATTACTCTGTGAAATCAGATGTCTTTGGTTTTGGCGTGATTGTACTAGAGATAGTTAGCGGAAGCAAGAACAGGGGATTTTCTGACCCGGAACACTCTCTTAATCTACTTGGACATGCATGGAGACTTTGGACTGAAGACAGGCCATTGGAACTGATAGATATAAACTTACATGAAAGATGCATTCCTTTTGAAGTCTTAAGATGCATACATGTGGGTTTGTTGTGTGTACAACAAAAACCAGGAGATAGGCCGGATATGTCTTCTGTCATTCCTATGCTGAATGGTGAGAAATTATTGCCTCAGCCAAAGGCTCCTGGATTTTATACAGGAAAGTGTATTCCTGAATTCTCTTCACCAAAAACGTGCAAATTTTTATCACAAAATGAGATATCCCTGACAATTTTCGAGGCAAGATAG 2454 0.3989 MLCIWFFLFSYFSGTCTSLHSLAVNQSIRDAENETLVSAGGIIEVGFFSPGKSTRRYLGIWFKNVNPLKVVWVANRNAPLEKNSGVLKLDEKGILVLLNHKNSTIWSSNISSKAGNNPIAHPLDSGNFVVKNGQQPGKDAILWQSFDYPGDTHTPGMKFGWSFGLERSISSWKSVDDPAEGEYVVKMDLRGYPQVIMFKGSEIKVRVGPWNGLSLVGYPVEIPYCSQKFVYNEKEVYYEYNLLHSLDFSLLKLSPSGRAQRMYWRTQTSTRQVLTIEEIDQCEYYDFCGENSICNYDGNRPTCECLRGYVPKSPDQWNMPIFQSGCAPRNKSDCKNSYTDGFLKYARMKLPDTSSSWFSKTMNLNECQKSCLKNCSCTAYANLDIRNGGSGCLLWFNNIVDMRYFSKSGQDVYIRVPASELDHAGPGNIKKKILGIAVGVTIFGLIITCVCILISKNPMARRLYCHIPRFQWRQEYLILRKEDMDLSTFELSTIAKATNNFSIRNKLGEGGFGPVYKGTLIDGQEVAIKRHSQMSDQGPGEFKNEVVLIAKLQHRNLVKLLGCCVQGGEKLLIYEYMPNKSLDYFIFDKARSKILAWNQRFHIIGGIARGLLYLHQDSRLRIIHRDLKTSNILLDANMNPKISDFGLARTFGCEQIQAKTRKVVGTYGYMPPEYAVHGHYSVKSDVFGFGVIVLEIVSGSKNRGFSDPEHSLNLLGHAWRLWTEDRPLELIDINLHERCIPFEVLRCIHVGLLCVQQKPGDRPDMSSVIPMLNGEKLLPQPKAPGFYTGKCIPEFSSPKTCKFLSQNEISLTIFEAR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1189 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 815 - -
Gso12g1189 817 CDD PAN_AP_plant 331 417 - -
Gso12g1189 817 Gene3D Phosphorylase Kinase; domain 1 469 576 - -
Gso12g1189 817 Gene3D Transferase(Phosphotransferase) domain 1 577 779 - -
Gso12g1189 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 178 IPR036426 -
Gso12g1189 817 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1189 817 Gene3D - 17 146 IPR036426 -
Gso12g1189 817 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 12 815 - -
Gso12g1189 817 Pfam Protein tyrosine and serine/threonine kinase 503 768 IPR001245 GO:0004672|GO:0006468
Gso12g1189 817 SUPERFAMILY Protein kinase-like (PK-like) 484 772 IPR011009 -
Gso12g1189 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Gso12g1189 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Gso12g1189 817 CDD B_lectin 33 149 IPR001480 -
Gso12g1189 817 SMART blect_4 27 149 IPR001480 -
Gso12g1189 817 CDD STKc_IRAK 507 774 - -
Gso12g1189 817 ProSiteProfiles Bulb-type lectin domain profile. 21 143 IPR001480 -
Gso12g1189 817 ProSiteProfiles PAN/Apple domain profile. 334 417 IPR003609 -
Gso12g1189 817 ProSiteProfiles Protein kinase domain profile. 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1189 817 ProSiteProfiles EGF-like domain profile. 278 315 IPR000742 -
Gso12g1189 817 SMART ntp_6 337 416 IPR003609 -
Gso12g1189 817 Pfam S-locus glycoprotein domain 206 313 IPR000858 GO:0048544
Gso12g1189 817 Pfam PAN-like domain 334 402 IPR003609 -
Gso12g1189 817 Pfam D-mannose binding lectin 70 173 IPR001480 -
Gso12g1189 817 Gene3D Hepatocyte Growth Factor 334 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1189 Gso-Chr12 19090442 19094410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1189 482 786 Receptor kinase-like Gene Family AT4G23230 58.442 9.04e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1189 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1189 - - gmx:100782811 1679.07