Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1188 ATGATGCATAGCACCTTAATGTTATGTATTTGGTTCTTGTTATTATCCTACTTGTCAGAAACTTGCACTTCACTACACAGTTTAGAAGTGAATCAATCCATCCGAGATGGTGAGACTTTGGTTTCAGCACGTGGAATTACTGAAGTGGGTTTCTTCAGTCCCGGAAATTCAACAAGACGATACTTGGGTATATGGTACACAAATGTATCCCCTTTCACAGTAGTGTGGGTGGCTAACCGAAATACACCTCTAGAGAATAAATCTGGAGTGCTGAAACTCAACGAAAAAGGGGTCCTTATGATTTTCGATGCTGCAAACAGCACCATTTGGTCGTCCAGCATACCAAGCAAAGCAAGGAATAATCCAATTGCTCATCTCTTGGATTCTGCAAATTTTGTAGTGAAAAATGGACGCGAAACCAACAGTGTTTTGTGGCAGAGTTTTGATTATCCAAGTGATACATTGATCCCAGGAATGAAGATTGGAGGGAACTTGGAAACTGGTGAAGAAAGGTTAATAACATCTTGGAAAAGTGCTGATGATCCGGCCGTGGGAGAATATACCACAAAAATTGACCTTAGAGGATATCCTCAATATGTTGTGCTCAAAGGATCTGAGATTATGGTTAGAGCCGGGCCTTGGAATGGCGAATCATGGGTTGGATATCCGCTTCAAACTCCAAATACATCACAAACTTTTTGGTTCAATGGAAAAGAGGGGTATTCTGAGATCCAGCTACTTGATAGATCAGTCTTCAGCATATACACACTGACTCCTTCAGGAACTACAAGGAATTTGTTTTGGACAACTCAAACGCGTACACGGCCAGTCCTTTCATCGGGGGAAGTGGATCAATGCGGCAAATATGCTATGTGCGGTACAAATTCTATTTGCAATTTTGATGGTAACTACGCAACTTGTGAGTGCCTGAAAGGTTATGTTCCCAAGTCTCCTGATCAATGGAATATAGCATCTTGGTCCGATGGTTGTGTTCCAAGGAATAAATCAAATTGTGAAAACAGTTATACAGACGGCTTCTTCAAGTACACACACTTGAAAATACCGGATACATCTTCATCGTGGTTTAGTAAGACTATGAACCTTGATGAATGTCGCAAGTCATGTCTTGAAAACTGTTTTTGTACAGCTTATGCAAATTTAGATATTCGTGATGGAGGAAGTGGCTGTCTACTTTGGTTTAATACTTTAGTTGACATGATGCAATTTTCTCAATGGGGTCAAGACTTGTATATCAGAGTCCCTGCTTCCGAATTAGATCATGTTGGCCATGGAAACAAGAAAAAGATAGCAGGAATCACTGTTGGTGTGACTATCGTTGGATTAATCATCACAAGTATATGCATATTGATGATTAAGAATCCAAGGGTTGCAAGGAAATTTTCAAACAAGCATTACAAAAATAAACAGGGAATAGAAGACATCGAGTTGCCAACTTTTGATTTGTCAGTTTTAGCAAATGCCACTGAAAACTATTCAACCAAAAACAAGCTTGGAGAAGGTGGCTTTGGACCAGTATACAAGGGCACATTGAAAGATGGACAAGAATTAGCGGTGAAAAGGCTTTCAAACAACTCTGGTCAAGGGTTAGAAGAGTTTAAAAATGAAGTAGCCTTGATTGCCAAACTTCAGCACCGTAATCTTGTAAAGCTTCTTGGATGCTGCATCGAAAGAGAAGAAAAAATGTTGGTCTATGAATACATGTCCAACAAAAGCTTGAACTACTTTGTTTTTGATGAAACTAAAGGCAAGTTACTAGATTGGTGTAAGCGTTTCAACATTATCTGTGGCATTGCTCGCGGATTATTGTATCTTCATCAAGATTCAAGGCTGAGGATTATTCATAGAGATCTTAAAACTAGCAACATTTTAGTGGATTCAAATTGGGACCCCAAGATATCCGACTTTGGCTTGGCTCGATCATTTTTGGAAGATCAATTTGAAGCAAAGACCAATAGGGTGGTTGGAACTTACGGTTACATGCCTCCTGAGTATGCTGTACGTGGGAATTTCTCGGTGAAATCAGATGTATTTAGTTTTGGTGTAATAATACTAGAGATTGTTAGTGGGAAGAAAAACAGGGAATTTTCAGACCCAGAACACTGCCATAATCTTCTTGGACATGCATGGAGATTATGGGTAGAAGAGAGGGCACTAGACCTATTGGATAAAGTGTTAGAAGAACAATGTAGACCATTTGAAGTCATACGATGCATACAAGTGGGCTTATTATGTGTACAAAGAAGACCAGAACACAGACCAGATATGTCATCAGTGGTTCCAATGTTGAATGGAGAGAAATTATTGCCAGAACCAACGGTTCCTGCCTTTTACAATGAGACAATTATAACTGAAGTAAATTGCAAATTATGCTCATCAAATGAACTTTCGATAACGCAATTAGATGCAAGATAG 2433 0.3933 MMHSTLMLCIWFLLLSYLSETCTSLHSLEVNQSIRDGETLVSARGITEVGFFSPGNSTRRYLGIWYTNVSPFTVVWVANRNTPLENKSGVLKLNEKGVLMIFDAANSTIWSSSIPSKARNNPIAHLLDSANFVVKNGRETNSVLWQSFDYPSDTLIPGMKIGGNLETGEERLITSWKSADDPAVGEYTTKIDLRGYPQYVVLKGSEIMVRAGPWNGESWVGYPLQTPNTSQTFWFNGKEGYSEIQLLDRSVFSIYTLTPSGTTRNLFWTTQTRTRPVLSSGEVDQCGKYAMCGTNSICNFDGNYATCECLKGYVPKSPDQWNIASWSDGCVPRNKSNCENSYTDGFFKYTHLKIPDTSSSWFSKTMNLDECRKSCLENCFCTAYANLDIRDGGSGCLLWFNTLVDMMQFSQWGQDLYIRVPASELDHVGHGNKKKIAGITVGVTIVGLIITSICILMIKNPRVARKFSNKHYKNKQGIEDIELPTFDLSVLANATENYSTKNKLGEGGFGPVYKGTLKDGQELAVKRLSNNSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEREEKMLVYEYMSNKSLNYFVFDETKGKLLDWCKRFNIICGIARGLLYLHQDSRLRIIHRDLKTSNILVDSNWDPKISDFGLARSFLEDQFEAKTNRVVGTYGYMPPEYAVRGNFSVKSDVFSFGVIILEIVSGKKNREFSDPEHCHNLLGHAWRLWVEERALDLLDKVLEEQCRPFEVIRCIQVGLLCVQRRPEHRPDMSSVVPMLNGEKLLPEPTVPAFYNETIITEVNCKLCSSNELSITQLDAR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1188 810 SMART blect_4 31 151 IPR001480 -
Gso12g1188 810 Pfam Protein tyrosine and serine/threonine kinase 500 768 IPR001245 GO:0004672|GO:0006468
Gso12g1188 810 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 807 - -
Gso12g1188 810 SMART ntp_6 341 420 IPR003609 -
Gso12g1188 810 Gene3D - 22 148 IPR036426 -
Gso12g1188 810 Pfam D-mannose binding lectin 73 177 IPR001480 -
Gso12g1188 810 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Gso12g1188 810 CDD STKc_IRAK 504 771 - -
Gso12g1188 810 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 807 - -
Gso12g1188 810 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Gso12g1188 810 Pfam PAN-like domain 338 406 IPR003609 -
Gso12g1188 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Gso12g1188 810 PIRSF SRK 1 810 IPR024171 GO:0004674
Gso12g1188 810 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Gso12g1188 810 ProSiteProfiles Protein kinase domain profile. 498 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1188 810 CDD B_lectin 31 151 IPR001480 -
Gso12g1188 810 Gene3D Transferase(Phosphotransferase) domain 1 574 775 - -
Gso12g1188 810 Gene3D Phosphorylase Kinase; domain 1 459 573 - -
Gso12g1188 810 CDD PAN_AP_plant 335 421 - -
Gso12g1188 810 SUPERFAMILY Protein kinase-like (PK-like) 483 783 IPR011009 -
Gso12g1188 810 SMART serkin_6 498 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1188 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 182 IPR036426 -
Gso12g1188 810 Gene3D Hepatocyte Growth Factor 337 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1188 Gso-Chr12 19071768 19075373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1188 465 784 Receptor kinase-like Gene Family AT4G11480 58.462 9.25e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1188 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1188 - - gmx:102667134 1658.66