Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1184 ATGACGTTTGAGGCAGCAAAAGAAATTGCTGACAAGATTGATTCGTTGGAGGAGCAGGCCTCACAGGGTTCCTTTGTCGCCCATCGACGTCAGGATGTACTTGCATTGCCTCCTGAGCCTGAGGTTGGTCCATCAGCTACTCGTGTCAAAACAAAGGAGAGATGTGTTGATCCATTAGGGAACGATCCAGACATAGGTGACTCAGAAAAATACGGGTTTCTTTGGTTCCATTACATCACAATGTTACTTATTTGGTTCTTTTTATTCTCCTACATGACTAGAACTTCCACTTCAGTAGACCATTTAGCAGCGAGTCGATCAATCCGAGATAGTCAGATTTTGGTTTCAGCAGGTAATATTACGGCACTGGGTTTCTTCAGTCCCGGAAACTCAACAAGACGATACTTGGGTATATGGTTTAGAAAAGTACACCCTTTTACAGTGGTGTGGGTGGCTAACCGAAATACACCTCTTGAGAATGAATCAGGAGTCCTAAAACTCAACAAAAGAGGGATTCTTGAGCTTCTCAATGGCAAAAACAGCACCATTTGGTCATCATCAAGCAACAAATCAAGCAAAGCAGCGAAAAAACCAATTGCTCAACTCCGGGATTTGGGAAATTTGGTAGTGATAAATGGACCCAAGCGCAACACTAAGAAGCACAAAACCAATAACGGTGACATCTTGTGGCAGAGTTTTGATTATCCGGGTGATACATTGATGCCAGGAATGAAACTTGGATGGACCTTAGAGAATGGTCTAGAAAGGTCTCTGTCATCTTGGAAAAATTGGAGTGATCCTGCTGAGGGGGAATATACTCTAAAAGTTGACCGTAGAGGATATCCTCAAATAATTTTATTCAGGGGACCAGATATTAAAAGGAGACTAGGTTCATGGAATGGCTTGCCTATAGTTGGATATCCAACTTCAACTCATCTAGTGTCGCAAAAATTTGTATTCCACGAAAAGGAGGTGTATTATGAGTACAAGGTTAAGGAGAAGGTTAATAGATCGGTCTTCAACTTATATAATCTGAACTCTTTTGGCACTGTGCGTGATTTGTTTTGGTCAACTCAAAACAGAAACCGGCGTGGATTCCAAATTTTGGAACAAAACCAATGCGAAGATTACGCCTTTTGCGGCGTAAATTCTATATGCAACTATATTGGTAAGAAAGCTACCTGTAAATGCGTGAAAGGATATTCTCCCAAGTCCCCTTCATGGAATTCGTCAACTTGGTCTCGCGGTTGTGTTCCTCCAATTCCAATGAATAAATCTAATTGCAAAAACAGTTATACAGAGGAATTCTGGAAGAACCAGCACATGAAATTTCCAGACACCTCTTCATCATTGTTTATTGAGACCATGGACTATACAGCTTGCAAAATAAGGTGTAGGGATAACTGTTCTTGTGTAGCATATGCAAATATAAGTACTGGTGGTGGAACTGGCTGTCTTCTCTGGTTTAATGAGCTGGTTGACTTGAGCTCTAATGGGGGACAAGACCTTTATACCAAAATCCCTGCTCCAGTACCCCCAAACAATAATACAATTGTCCATCCTGCTTCAGATCCAGCTGACCATAGAAACCTCAAGATAAAGACAGTAGCAATCACTGTTGGTGTGACTACTTTTGGATTAATAATCATATATGTGTGGATATGGATAATTAAAAATCCAGGGGCTGCAAGAAAATTTTACAAGCAGAATTTCAGAAAAGTAAAGAGAATGAAAGAGATTGATTTACCAACTTTCGATTTGTCAGTCTTAGCTAATGCGACTGAAAACTTTTCAAGCAAACACAAGCTTGGAGAAGGTGGCTTTGGACCAGTATACAAGGGAACATTGATAGATGGGAAAGTGATAGCTGTGAAAAGGCTTTCAAAGAAGTCCAAACAAGGGCTGGATGAGTTAAAAAATGAGGTGGCACTGATTGCCAAACTTCAGCACCGTAATCTTGTAAAGCTTCTTGGCTGCTGCATTGAAGGAGAAGAAAAAATGTTAATTTATGAATACATGCCCAACCTCAGCTTGGACTGCTTTCTTTTTGATGAAACCAAAAAGAAATTGCTAGATTGGCCTAAGCGTTTCAACATTATTAGCGGTATTACTCGAGGACTTGTTTATCTTCATCAAGACTCTAGGCTGAGAATTATTCATAGAGATCTAAAAACTAGCAATATTTTACTGGACGACAATTTGGATCCCAAAATATCAGACTTTGGCTTGGCTCGATCGTTTTTGGAAGATCAAGTTGAGGCAAACACAAATAGGGTGGCTGGAACATGTGGCTACATGCCTCCTGAGTATGCTGCGGGTGGGCGATTCTCAGTGAAATCAGATGTCTTTAGCTATGGAGTGATTGTACTAGAGATTGTAAGCGGGAAGAGAAACACAGAGTTTGCAAATTCTGAAAACTACAATAATATTCTTGGACATGCATGGACATTATGGACTGAAGATAGGGCACTGGAACTACTGGATGATGTGGTAGGAGAACAATGTAAGCCCTATGAAGTCATACGATGCATACAGGTAGGCCTATTATGTGTGCAACAAAGACCACAAGATAGGCCACACATGTCATCAGTTCTTTCAATGTTGAGTGGTGATAAATTGTTGCCAAAGCCAATGGCTCCTGGCTTTTACTCCGGAACAAATGTTACATCTGAAGCAACTTCTTCGTCGGCAAATCACAAACTGTGGTCGGTCAATGAAGCTTCTATCACAGAGTTAGATGCAAGATAG 2748 0.4079 MTFEAAKEIADKIDSLEEQASQGSFVAHRRQDVLALPPEPEVGPSATRVKTKERCVDPLGNDPDIGDSEKYGFLWFHYITMLLIWFFLFSYMTRTSTSVDHLAASRSIRDSQILVSAGNITALGFFSPGNSTRRYLGIWFRKVHPFTVVWVANRNTPLENESGVLKLNKRGILELLNGKNSTIWSSSSNKSSKAAKKPIAQLRDLGNLVVINGPKRNTKKHKTNNGDILWQSFDYPGDTLMPGMKLGWTLENGLERSLSSWKNWSDPAEGEYTLKVDRRGYPQIILFRGPDIKRRLGSWNGLPIVGYPTSTHLVSQKFVFHEKEVYYEYKVKEKVNRSVFNLYNLNSFGTVRDLFWSTQNRNRRGFQILEQNQCEDYAFCGVNSICNYIGKKATCKCVKGYSPKSPSWNSSTWSRGCVPPIPMNKSNCKNSYTEEFWKNQHMKFPDTSSSLFIETMDYTACKIRCRDNCSCVAYANISTGGGTGCLLWFNELVDLSSNGGQDLYTKIPAPVPPNNNTIVHPASDPADHRNLKIKTVAITVGVTTFGLIIIYVWIWIIKNPGAARKFYKQNFRKVKRMKEIDLPTFDLSVLANATENFSSKHKLGEGGFGPVYKGTLIDGKVIAVKRLSKKSKQGLDELKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNLSLDCFLFDETKKKLLDWPKRFNIISGITRGLVYLHQDSRLRIIHRDLKTSNILLDDNLDPKISDFGLARSFLEDQVEANTNRVAGTCGYMPPEYAAGGRFSVKSDVFSYGVIVLEIVSGKRNTEFANSENYNNILGHAWTLWTEDRALELLDDVVGEQCKPYEVIRCIQVGLLCVQQRPQDRPHMSSVLSMLSGDKLLPKPMAPGFYSGTNVTSEATSSSANHKLWSVNEASITELDAR* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1184 915 ProSiteProfiles Bulb-type lectin domain profile. 99 223 IPR001480 -
Gso12g1184 915 SUPERFAMILY alpha-D-mannose-specific plant lectins 148 267 IPR036426 -
Gso12g1184 915 SMART serkin_6 597 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1184 915 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 94 912 - -
Gso12g1184 915 CDD B_lectin 105 236 IPR001480 -
Gso12g1184 915 SMART blect_4 105 236 IPR001480 -
Gso12g1184 915 Gene3D - 93 233 IPR036426 -
Gso12g1184 915 CDD STKc_IRAK 603 868 - -
Gso12g1184 915 Pfam Protein tyrosine and serine/threonine kinase 599 867 IPR001245 GO:0004672|GO:0006468
Gso12g1184 915 ProSiteProfiles PAN/Apple domain profile. 428 508 IPR003609 -
Gso12g1184 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Gso12g1184 915 Gene3D Transferase(Phosphotransferase) domain 1 673 874 - -
Gso12g1184 915 SMART ntp_6 431 507 IPR003609 -
Gso12g1184 915 SUPERFAMILY Protein kinase-like (PK-like) 581 868 IPR011009 -
Gso12g1184 915 Gene3D Phosphorylase Kinase; domain 1 559 672 - -
Gso12g1184 915 ProSiteProfiles Protein kinase domain profile. 597 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1184 915 Pfam S-locus glycoprotein domain 295 405 IPR000858 GO:0048544
Gso12g1184 915 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 94 912 - -
Gso12g1184 915 Pfam D-mannose binding lectin 147 262 IPR001480 -
Gso12g1184 915 PIRSF SRK 73 915 IPR024171 GO:0004674
Gso12g1184 915 CDD PAN_AP_plant 425 508 - -
Gso12g1184 915 Pfam PAN-like domain 428 495 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1184 Gso-Chr12 18670639 18676593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1184 577 915 Receptor kinase-like Gene Family AT4G23140 52.571 2.36e-120 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1184 PK_Tyr_Ser-Thr 9.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1184 - - gsj:114378849 1851.64