LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g1182	ATGGTTCTTAAAGATGGAGACAATAACTTTTTGTGGCAAAGCTTTGATTACCCTGGTGACACTTTACTTCCAGGAATGAAAATTGGAGTGAACTTCAAAACCGGTCAACATCGAGCTCTAAGATCATGGAGATCCTTTACGGATCCTACTCCAGCTTATAGACCAGGGTCATGGAATGGTCTTAGTATCACGGGGCTTCCTGGAGAAATAACTGACCAATTAACAAAATCCCTTTTTGTTATGAATCAAGATGAGGTCTTCTATGAGATTCAGCTCTTGAATAGTTCAACTAAACTCATGAGAAGCAGATTGCTTCCAGAAGGGTATCAAGTACGTTTTATATGGTCAGATGAGAAAAAAATATGGGATTCTCAATTCCCTAAACCATTTGATGTGTGTCAGACATATGCCTTGTGTGGTGCAAATGCTATTTGCGATTTCAATGGAAAAGCTAAACACTGTGGATGCTTGAGTGGATTCAAAGCCAACTCTGCTGGTTCAATTTGTGCTCGAACTACCCGTCTAGATTGTAATAAGGGAGGTATAGATAAATTTCAGAAGTATAAGGGAATGAAATTGCCTGACACATCTTCATCTTGGTATGATAGGACTATTACTACTCTTCTGGAATGTGAAAAATTGTGCTTGAGCAATTGCTCTTGTACTGCATATGCTCAATTGAATATCAGTGGCGAGGGAAGTGGCTGCTTGCATTGGTTTTCTGACATTGTTGACATCAGGACACTCCCAGAGGGAGGACAAAATTTTTATTTACGAATGGCTACAGTTACAGCTTCAGAGTTACAATTACAAGATCACCGCTTCAGCAGGAAGAAATTAGCAGGAATTGTGGTTGGCTGTACTATCTTCATCATTGCGGTTACTGTATTCGGATTGATATTTTGCATTAGGAGGAAGAAACTCAAGCAGTCAGAAGCAAATTATTGGAAAGACAAGAGTAAGGAGGATGACATTGATTTACCAATATTTCACTTTTTATCCATCTCCAATGCCACAAATCAGTTTTCAGAGAGTAACAAATTGGGACAAGGCGGCTTTGGACCTGTGTACAAGGGCATATTGCCAGATGGGCAAGAGATTGCAGTTAAGAGACTTTCTAAAACTTCTGGACAAGGTTTGGACGAGTTCAAAAATGAAGTCATGTTGGTTGCAAAACTTCAACACCGCAATCTTGTAAAACTTCTTGGTTGTTCAATTCAGCAAGATGAAAAGTTGTTGGTTTATGAATTCATGCCAAATAGAAGCTTGGACTACTTTATTTTTGATTCAACAAGACGCACATTATTAGGTTGGGCTAAGCGATTCGAAATTATTGGTGGAATTGCTCGAGGACTTCTATATCTTCATCAAGACTCTAGACTAAAAATCATTCATAGGGATCTCAAGACTGGTAATGTTCTTCTCGATAGTAATATGAACCCAAAAATATCAGATTTTGGTATGGCTAGGACATTTGGGCTGGATCAAGATGAAGCAAACACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTGTCCATGGATCTTTTTCAGTCAAATCTGATGTCTTTAGCTTTGGTGTGATTGTGTTGGAGATAATCAGTGGAAGGAAGAACAGGGGATTTTGTGACCCACACAATCATCTAAATCTTCTTGGACATGCATGGAGACTATGGATTGAGAAAAGACCATTGGAACTTATGGATGACTCAGCGGACAATCTAGTCGCTCCATCTGAAATATTAAGATATATTCATATTGGTTTGTTATGCGTACAACAAAGACCAGAAGATAGGCCAAACATGTCTTCGGTAGTTTTAATGCTGAATGGTGAAAAGTTATTGCCCGAGCCAAGTCAACCCGGGTTCTACACAGGAGGAAGAGACCATTCAACCGTGACAAATTCTTCTTCAAGAAATTGTGAAGCGTACTCCCTCAACGAAATGTCTGACTCATTGCTCAAGCCAAGATAG	1986	0.3933	MVLKDGDNNFLWQSFDYPGDTLLPGMKIGVNFKTGQHRALRSWRSFTDPTPAYRPGSWNGLSITGLPGEITDQLTKSLFVMNQDEVFYEIQLLNSSTKLMRSRLLPEGYQVRFIWSDEKKIWDSQFPKPFDVCQTYALCGANAICDFNGKAKHCGCLSGFKANSAGSICARTTRLDCNKGGIDKFQKYKGMKLPDTSSSWYDRTITTLLECEKLCLSNCSCTAYAQLNISGEGSGCLHWFSDIVDIRTLPEGGQNFYLRMATVTASELQLQDHRFSRKKLAGIVVGCTIFIIAVTVFGLIFCIRRKKLKQSEANYWKDKSKEDDIDLPIFHFLSISNATNQFSESNKLGQGGFGPVYKGILPDGQEIAVKRLSKTSGQGLDEFKNEVMLVAKLQHRNLVKLLGCSIQQDEKLLVYEFMPNRSLDYFIFDSTRRTLLGWAKRFEIIGGIARGLLYLHQDSRLKIIHRDLKTGNVLLDSNMNPKISDFGMARTFGLDQDEANTNRVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFCDPHNHLNLLGHAWRLWIEKRPLELMDDSADNLVAPSEILRYIHIGLLCVQQRPEDRPNMSSVVLMLNGEKLLPEPSQPGFYTGGRDHSTVTNSSSRNCEAYSLNEMSDSLLKPR*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g1182	661	Pfam	Protein tyrosine and serine/threonine kinase	345	611	IPR001245	GO:0004672\|GO:0006468
	Gso12g1182	661	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	1	660	-	-
	Gso12g1182	661	ProSiteProfiles	PAN/Apple domain profile.	177	261	IPR003609	-
	Gso12g1182	661	Pfam	PAN-like domain	180	246	IPR003609	-
	Gso12g1182	661	ProSiteProfiles	Protein kinase domain profile.	342	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso12g1182	661	SUPERFAMILY	alpha-D-mannose-specific plant lectins	1	49	IPR036426	-
	Gso12g1182	661	SMART	ntp_6	180	260	IPR003609	-
	Gso12g1182	661	Gene3D	Phosphorylase Kinase; domain 1	316	417	-	-
	Gso12g1182	661	CDD	STKc_IRAK	348	615	-	-
	Gso12g1182	661	SMART	serkin_6	342	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso12g1182	661	Gene3D	Hepatocyte Growth Factor	178	261	-	-
	Gso12g1182	661	MobiDBLite	consensus disorder prediction	622	642	-	-
	Gso12g1182	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Gso12g1182	661	SUPERFAMILY	Protein kinase-like (PK-like)	326	613	IPR011009	-
	Gso12g1182	661	Gene3D	Transferase(Phosphotransferase) domain 1	418	619	-	-
	Gso12g1182	661	CDD	PAN_AP_plant	173	261	-	-
	Gso12g1182	661	Pfam	S-locus glycoprotein domain	53	163	IPR000858	GO:0048544
	Gso12g1182	661	Pfam	D-mannose binding lectin	2	44	IPR001480	-
	Gso12g1182	661	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	1	660	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g1182	Gso-Chr12	18604605	18608678	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g1182	296	637	Receptor kinase-like Gene Family	AT3G45860	57.714	8.55e-134	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso12g1182		PK_Tyr_Ser-Thr	1.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g1182	-		-	gmx:100802416	1344.72